********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get
a copy of the MEME software please access http://meme-suite.org .

This file may be used as input to the MAST algorithm for searching
sequence databases for matches to groups of motifs.  MAST is available
for interactive use and downloading at http://meme-suite.org .
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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to discover
motifs in biopolymers", Proceedings of the Second International
Conference on Intelligent Systems for Molecular Biology, pp. 28-36,
AAAI Press, Menlo Park, California, 1994.
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TRAINING SET
********************************************************************************
DATAFILE= lexA_B-TCGGGTTA_summits_combined_sorted.fasta
ALPHABET= ACGT
Sequence name            Weight Length  Sequence name            Weight Length
-------------            ------ ------  -------------            ------ ------
Aliivibrio_fischeri_ATCC 1.0000     60  Citrobacter_koseri_ATCCB 1.0000     60
Salmonella_enterica_LT2_ 1.0000     60  Aliivibrio_fischeri_ATCC 1.0000     60
Enterobacter_cloacae_ATC 1.0000     60  Enterobacter_cloacae_ATC 1.0000     60
Escherichia_coli_MG1655_ 1.0000     60  Pseudomonas_aeruginosa_P 1.0000     60
Cupriavidus_basilensis_4 1.0000     60  Salmonella_enterica_LT2_ 1.0000     60
Salmonella_enterica_LT2_ 1.0000     60  Klebsiella_psneumoniae_A 1.0000     60
Herbaspirillum_seropedic 1.0000     60  Klebsiella_oxytoca_M5al_ 1.0000     60
Shewanella_amazonensis_S 1.0000     60  Shewanella_amazonensis_S 1.0000     60
Paraburkholderia_phytofi 1.0000     60  Paraburkholderia_phytofi 1.0000     60
Aliivibrio_fischeri_ATCC 1.0000     60  Escherichia_fergusonii_A 1.0000     60
Providencia_stuartii_ATC 1.0000     60  Escherichia_fergusonii_A 1.0000     60
Pseudomonas_fluorescens_ 1.0000     60  Aliivibrio_fischeri_ATCC 1.0000     60
Enterobacter_cloacae_ATC 1.0000     60  Pseudomonas_fluorescens_ 1.0000     60
Pseudomonas_simiae_WCS41 1.0000     60  Klebsiella_psneumoniae_A 1.0000     60
Pseudomonas_fluorescens_ 1.0000     60  Pseudomonas_stutzeri_RCH 1.0000     60
Aliivibrio_fischeri_ATCC 1.0000     60  Escherichia_coli_BW25113 1.0000     60
Klebsiella_psneumoniae_A 1.0000     60  Cupriavidus_basilensis_4 1.0000     60
Klebsiella_psneumoniae_A 1.0000     60  Pseudomonas_fluorescens_ 1.0000     60
Burkholderia_bryophila_3 1.0000     60  Acidovorax_sp_GW101-3H11 1.0000     60
Providencia_stuartii_ATC 1.0000     60  Klebsiella_psneumoniae_A 1.0000     60
Aliivibrio_fischeri_ATCC 1.0000     60  Shewanella_loihica_PV-4_ 1.0000     60
Cupriavidus_basilensis_4 1.0000     60  Shewanella_amazonensis_S 1.0000     60
Enterobacter_cloacae_ATC 1.0000     60  Escherichia_coli_MG1655_ 1.0000     60
Pseudomonas_putida_KT244 1.0000     60  Shigella_flexneri_ATCC70 1.0000     60
Pseudomonas_fluorescens_ 1.0000     60  Burkholderia_bryophila_3 1.0000     60
Cupriavidus_basilensis_4 1.0000     60  Shigella_flexneri_ATCC70 1.0000     60
Shewanella_loihica_PV-4_ 1.0000     60  Paraburkholderia_phytofi 1.0000     60
Klebsiella_oxytoca_M5al_ 1.0000     60  Marinobacter_adhaerens_H 1.0000     60
Marinobacter_adhaerens_H 1.0000     60  Salmonella_enterica_LT2_ 1.0000     60
Shewanella_amazonensis_S 1.0000     60  Paraburkholderia_phytofi 1.0000     60
Paraburkholderia_phytofi 1.0000     60  Marinobacter_hydrocarbon 1.0000     60
Burkholderia_bryophila_3 1.0000     60  Enterobacter_cloacae_ATC 1.0000     60
Acidovorax_sp_GW101-3H11 1.0000     60  Shewanella_sp_ANA-3_lexA 1.0000     60
Cupriavidus_basilensis_4 1.0000     60  Pseudomonas_fluorescens_ 1.0000     60
Salmonella_enterica_LT2_ 1.0000     60  Shigella_flexneri_ATCC70 1.0000     60
Pseudomonas_simiae_WCS41 1.0000     60  Paraburkholderia_phytofi 1.0000     60
Cupriavidus_basilensis_4 1.0000     60  Cupriavidus_basilensis_4 1.0000     60
Marinobacter_hydrocarbon 1.0000     60  Herbaspirillum_seropedic 1.0000     60
Paraburkholderia_phytofi 1.0000     60  Aliivibrio_fischeri_ATCC 1.0000     60
Shewanella_oneidensis_MR 1.0000     60  Ralstonia_sp_UNC404CL21C 1.0000     60
Klebsiella_oxytoca_M5al_ 1.0000     60  Klebsiella_oxytoca_M5al_ 1.0000     60
Escherichia_coli_MG1655_ 1.0000     60  Cupriavidus_basilensis_4 1.0000     60
Shewanella_oneidensis_MR 1.0000     60  Enterobacter_cloacae_ATC 1.0000     60
Pseudomonas_fluorescens_ 1.0000     60  Paraburkholderia_phytofi 1.0000     60
Ralstonia_sp_UNC404CL21C 1.0000     60  Herbaspirillum_seropedic 1.0000     60
Marinobacter_hydrocarbon 1.0000     60  Escherichia_coli_MG1655_ 1.0000     60
Escherichia_fergusonii_A 1.0000     60  Klebsiella_oxytoca_M5al_ 1.0000     60
Enterobacter_cloacae_ATC 1.0000     60  Aeromonas_hydrophila_ATC 1.0000     60
Klebsiella_psneumoniae_A 1.0000     60  Saccharophagus_degradans 1.0000     60
Burkholderia_bryophila_3 1.0000     60  Herbaspirillum_seropedic 1.0000     60
********************************************************************************

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COMMAND LINE SUMMARY
********************************************************************************
This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme lexA_B-TCGGGTTA_summits_combined_sorted.fasta -oc lexA_B-TCGGGTTA_motifs_summits -dna -revcomp -mod anr -nmotifs 3 -minw 8 -maxw 32 -maxsize 1000000

model:  mod=           anr    nmotifs=         3    evt=           inf
object function=  E-value of product of p-values
width:  minw=            8    maxw=           32
width:  wg=             11    ws=              1    endgaps=       yes
nsites: minsites=        2    maxsites=       50    wnsites=       0.8
theta:  spmap=         uni    spfuzz=        0.5
global: substring=     yes    branching=      no    wbranch=        no
em:     prior=   dirichlet    b=            0.01    maxiter=        50
        distance=    1e-05
data:   n=            6000    N=             100    shuffle=        -1
strands: + -
sample: seed=            0    ctfrac=         -1    maxwords=       -1
Letter frequencies in dataset:
A 0.317 C 0.183 G 0.183 T 0.317
Background letter frequencies (from dataset with add-one prior applied):
A 0.317 C 0.183 G 0.183 T 0.317
********************************************************************************


********************************************************************************
MOTIF lexA MEME-1	width =  22  sites =  50  llr = 932  E-value = 2.4e-218
********************************************************************************
--------------------------------------------------------------------------------
	Motif lexA MEME-1 Description
--------------------------------------------------------------------------------
Simplified        A  ::::a:94a6628:a::561:1
pos.-specific     C  a::::2:1:1:42a:::3:41:
probability       G  ::a:::1::::::::a:2::36
matrix            T  :a:a:8:4:343::::a:4563

         bits    2.5 * *          *
                 2.2 * *          * *
                 2.0 * *          * *
                 1.7 *****        ***
Relative         1.5 *****   *    ****
Entropy          1.2 *****   *   *****
(26.9 bits)      1.0 ******* *   *****
                 0.7 ******* * * *****    *
                 0.5 ******* ********* ****
                 0.2 **********************
                 0.0 ----------------------

Multilevel           CTGTATATAAACACAGTAATTG
consensus                 C A TTT     CTCGT
sequence                        A     G

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif lexA MEME-1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name            Strand  Start   P-value                     Site
-------------            ------  ----- ---------            ----------------------
Marinobacter_hydrocarbon     +     15  9.76e-12 AGGAAAAAGC CTGTATATATTCACAGTCACTG TATGAAAAAA
Marinobacter_adhaerens_H     +     14  9.76e-12 CACAAAAACC CTGTATATATTCACAGTCACTG TATACATCCA
Pseudomonas_fluorescens_     +     16  2.71e-11 GCGCCGCCCA CTGTATATAATCCCAGTCACTG TATAAAAAGA
Pseudomonas_fluorescens_     +     17  2.71e-11 GACCACTCCA CTGTATATAATCCCAGTCACTG TATAAAAAGA
Pseudomonas_stutzeri_RCH     +     16  2.71e-11 GGCCGGATCA CTGTATATAATCCCAGTCACTG TATAAAAGAA
Pseudomonas_fluorescens_     +     17  2.71e-11 GACCGCCTTA CTGTATATAATCCCAGTCACTG TATAAAAAAA
Pseudomonas_simiae_WCS41     -     26  2.71e-11 GCGCAGTCCA CTGTATATAATCCCAGTCACTG TATAAAAAGA
Pseudomonas_fluorescens_     +     17  2.71e-11 GTGGCGTTCA CTGTATATAATCCCAGTCACTG TATAAAAAGA
Pseudomonas_aeruginosa_P     +     20  2.71e-11 GCCCCGCTCA CTGTATATAATCCCAGTCACTG GATAAAAACA
Ralstonia_sp_UNC404CL21C     -     26  9.92e-11 CTGTGGATAC CTGTATATATTTACAGTAACTG TAAATTTATA
Cupriavidus_basilensis_4     +     17  9.92e-11 AACCGCATTA CTGTATATATTTACAGTAACTG TATGGATGAA
Pseudomonas_putida_KT244     -     23  1.71e-10 GCACCCAGTA CTGTATATAATTCCAGTCACTG TACAAAAAGA
Enterobacter_cloacae_ATC     +     32  2.02e-10 CCAGTTTATA CTGTATGAAAACACAGTCATGG TTTTTCA
Herbaspirillum_seropedic     +     22  3.16e-10 ATGGCGGTAA CTGTATAAATATACAGTATTTG TTTTGGTGTG
Klebsiella_psneumoniae_A     +     24  3.16e-10 TTAATTTATA CTGTATAAAAACACAGTGTATG ATTTTGCTTC
Shewanella_oneidensis_MR     +     16  3.65e-10 ATGAATAATA CTGTATATACTAACAGTAACTG TATAGAAAAA
Shewanella_sp_ANA-3_lexA     +     20  3.65e-10 ACGAATAATA CTGTATATACTAACAGTAACTG TATAGAAAAA
Cupriavidus_basilensis_4     +     22  4.78e-10 GTGACGACAA CTGTATAAATATACAGTGTTTG CCGGCTAACC
Klebsiella_oxytoca_M5al_     +     24  5.45e-10 CCAGATTATA CTGTACGAAAACACAGTAATGG TTTTTCATAC
Pseudomonas_fluorescens_     -     17  6.19e-10 TTCAAAACAA CTGTACAAAAACACAGTATTTT TTGAATCCCA
Pseudomonas_fluorescens_     -     18  8.96e-10 TTCAAAACAA CTGTACAAAAACACAGTGTTTT TTTATCCCAC
Shigella_flexneri_ATCC70     +     26  8.96e-10 CCAGTTTATA CTGTACACAATAACAGTAATGG TTTTTCATAC
Escherichia_coli_BW25113     +     26  8.96e-10 CCAGTTTATA CTGTACACAATAACAGTAATGG TTTTTCATAC
Escherichia_fergusonii_A     -     16  8.96e-10 CCAGTTTATA CTGTACACAATAACAGTAATGG TTTTTCATAC
Klebsiella_psneumoniae_A     +     26  8.96e-10 CCAGTCTATA CTGTACGAAAACACAGTATTGG TTTTTCATAC
Escherichia_coli_MG1655_     +     27  8.96e-10 CCAGTTTATA CTGTACACAATAACAGTAATGG TTTTTCATAC
Herbaspirillum_seropedic     +     24  1.13e-09 AGGCAGAATA CTGTATATAAATACAGTATTGT TGAGCTTCCG
Providencia_stuartii_ATC     +     15  1.26e-09 CGCAATCAAA CTGTATGCATATACAGTAACTG TATATTTATC
Paraburkholderia_phytofi     -     19  1.40e-09 ATACCCTGTA CTGTACAAATATACAGTGTTGG ATGCAACCTC
Paraburkholderia_phytofi     -     29  1.40e-09 GCGCCGAATA CTGTATAAAAATACAGTCACCT GTTCATACAT
Cupriavidus_basilensis_4     -     20  1.91e-09 ATCCGTGATA CTGTATAAACATACAGTATCCG GAAACTTCCT
Pseudomonas_fluorescens_     -     15  2.32e-09 CTCAAAACAA CTGTACAAAAACACAGTATATT TTGAACCAAC
Pseudomonas_simiae_WCS41     +     28  3.05e-09 GTCAAAACAA CTGTACAAAAACACAGTATAGT TTGCCCTCCC
Shewanella_amazonensis_S     -     17  3.05e-09 AATTGTTATA CTGTATAAATATACAGTTATTG GTGATTTGGA
Shewanella_amazonensis_S     +     17  3.05e-09 GATTAAAATA CTGTATATACTGACAGTAACTG TATAGAAAAA
Herbaspirillum_seropedic     +     20  4.27e-09 AGCACAAACA CTGTATGCATACACAGTATTTT TTGTACAGTA
Klebsiella_oxytoca_M5al_     +     25  4.62e-09 GCTAAATCTA CTGTATATATAAACAGTGTTTA TGTGAGCGAG
Enterobacter_cloacae_ATC     +     20  5.39e-09 GTCAATAATA CTGTACAAAAACACAGTATAGA GTTAACTGTA
Burkholderia_bryophila_3     +     20  6.27e-09 AACCCAGACA CTGTATAAAAAAACAGTGGTTT TGGCAAGCGC
Salmonella_enterica_LT2_     +     26  6.75e-09 CCAGTTTATA CTGTATTTAATTACAGTCATGG TTTTTCATAC
Paraburkholderia_phytofi     -     20  8.34e-09 CGGACAAATA CTGTATAAATTCACAGTACTGT TTTTATATAC
Escherichia_coli_MG1655_     -     11  1.24e-08 TAGAAGTTTA CTGTATAAATAAACAGTAATAT TTGGACAAAA
Klebsiella_oxytoca_M5al_     +     26  1.24e-08 TTTACGTATA CTGTATATACATACAGTATTCA TTCACCGTAC
Burkholderia_bryophila_3     -     29  1.68e-08 GCGCCGGATA CTGTATAAAAATACAGGCACCT GTTCATCCAT
Aliivibrio_fischeri_ATCC     +     20  1.68e-08 TTTAAAAGTA CTGTATAAATACACACTGTATG GATGAACAGG
Citrobacter_koseri_ATCCB     -     24  1.78e-08 AATTTTTATA CTGTATATAAAACCAGTGGTTA TATGTACAGT
Klebsiella_psneumoniae_A     +     27  1.89e-08 GTCAAAACTA CTGTATATAAAAACAGTGTTAA TGTGAGCGAG
Cupriavidus_basilensis_4     +     14  3.58e-08 TCACTCGATA CTGTATAAAATCACAGCATACT GTTTAAACAT
Aliivibrio_fischeri_ATCC     +     18  4.52e-08 TCATTAGCAA CTGTATATTTAAACAGTGTTTA TTTTTATACG
Salmonella_enterica_LT2_     -     14  4.95e-08 TTACACAATA CTGTATGCATATACAGTTAATT TTTTGCATTT
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif lexA MEME-1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
Marinobacter_hydrocarbon          9.8e-12  14_[+1]_24
Marinobacter_adhaerens_H          9.8e-12  13_[+1]_25
Pseudomonas_fluorescens_          2.7e-11  15_[+1]_23
Pseudomonas_fluorescens_          2.7e-11  16_[+1]_22
Pseudomonas_stutzeri_RCH          2.7e-11  15_[+1]_23
Pseudomonas_fluorescens_          2.7e-11  16_[+1]_22
Pseudomonas_simiae_WCS41          2.7e-11  25_[-1]_13
Pseudomonas_fluorescens_          2.7e-11  16_[+1]_22
Pseudomonas_aeruginosa_P          2.7e-11  19_[+1]_19
Ralstonia_sp_UNC404CL21C          9.9e-11  25_[-1]_13
Cupriavidus_basilensis_4          9.9e-11  16_[+1]_22
Pseudomonas_putida_KT244          1.7e-10  22_[-1]_16
Enterobacter_cloacae_ATC            2e-10  31_[+1]_7
Herbaspirillum_seropedic          3.2e-10  21_[+1]_17
Klebsiella_psneumoniae_A          3.2e-10  23_[+1]_15
Shewanella_oneidensis_MR          3.6e-10  15_[+1]_23
Shewanella_sp_ANA-3_lexA          3.6e-10  19_[+1]_19
Cupriavidus_basilensis_4          4.8e-10  21_[+1]_17
Klebsiella_oxytoca_M5al_          5.4e-10  23_[+1]_15
Pseudomonas_fluorescens_          6.2e-10  16_[-1]_22
Pseudomonas_fluorescens_            9e-10  17_[-1]_21
Shigella_flexneri_ATCC70            9e-10  25_[+1]_13
Escherichia_coli_BW25113            9e-10  25_[+1]_13
Escherichia_fergusonii_A            9e-10  15_[-1]_23
Klebsiella_psneumoniae_A            9e-10  25_[+1]_13
Escherichia_coli_MG1655_            9e-10  26_[+1]_12
Herbaspirillum_seropedic          1.1e-09  23_[+1]_15
Providencia_stuartii_ATC          1.3e-09  14_[+1]_24
Paraburkholderia_phytofi          1.4e-09  18_[-1]_20
Paraburkholderia_phytofi          1.4e-09  28_[-1]_10
Cupriavidus_basilensis_4          1.9e-09  19_[-1]_19
Pseudomonas_fluorescens_          2.3e-09  14_[-1]_24
Pseudomonas_simiae_WCS41            3e-09  27_[+1]_11
Shewanella_amazonensis_S            3e-09  16_[-1]_22
Shewanella_amazonensis_S            3e-09  16_[+1]_22
Herbaspirillum_seropedic          4.3e-09  19_[+1]_19
Klebsiella_oxytoca_M5al_          4.6e-09  24_[+1]_14
Enterobacter_cloacae_ATC          5.4e-09  19_[+1]_19
Burkholderia_bryophila_3          6.3e-09  19_[+1]_19
Salmonella_enterica_LT2_          6.7e-09  25_[+1]_13
Paraburkholderia_phytofi          8.3e-09  19_[-1]_19
Escherichia_coli_MG1655_          1.2e-08  10_[-1]_28
Klebsiella_oxytoca_M5al_          1.2e-08  25_[+1]_13
Burkholderia_bryophila_3          1.7e-08  28_[-1]_10
Aliivibrio_fischeri_ATCC          1.7e-08  19_[+1]_19
Citrobacter_koseri_ATCCB          1.8e-08  23_[-1]_15
Klebsiella_psneumoniae_A          1.9e-08  26_[+1]_12
Cupriavidus_basilensis_4          3.6e-08  13_[+1]_25
Aliivibrio_fischeri_ATCC          4.5e-08  17_[+1]_21
Salmonella_enterica_LT2_          4.9e-08  13_[-1]_25
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif lexA MEME-1 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF lexA width=22 seqs=50
Marinobacter_hydrocarbon (   15) CTGTATATATTCACAGTCACTG  1
Marinobacter_adhaerens_H (   14) CTGTATATATTCACAGTCACTG  1
Pseudomonas_fluorescens_ (   16) CTGTATATAATCCCAGTCACTG  1
Pseudomonas_fluorescens_ (   17) CTGTATATAATCCCAGTCACTG  1
Pseudomonas_stutzeri_RCH (   16) CTGTATATAATCCCAGTCACTG  1
Pseudomonas_fluorescens_ (   17) CTGTATATAATCCCAGTCACTG  1
Pseudomonas_simiae_WCS41 (   26) CTGTATATAATCCCAGTCACTG  1
Pseudomonas_fluorescens_ (   17) CTGTATATAATCCCAGTCACTG  1
Pseudomonas_aeruginosa_P (   20) CTGTATATAATCCCAGTCACTG  1
Ralstonia_sp_UNC404CL21C (   26) CTGTATATATTTACAGTAACTG  1
Cupriavidus_basilensis_4 (   17) CTGTATATATTTACAGTAACTG  1
Pseudomonas_putida_KT244 (   23) CTGTATATAATTCCAGTCACTG  1
Enterobacter_cloacae_ATC (   32) CTGTATGAAAACACAGTCATGG  1
Herbaspirillum_seropedic (   22) CTGTATAAATATACAGTATTTG  1
Klebsiella_psneumoniae_A (   24) CTGTATAAAAACACAGTGTATG  1
Shewanella_oneidensis_MR (   16) CTGTATATACTAACAGTAACTG  1
Shewanella_sp_ANA-3_lexA (   20) CTGTATATACTAACAGTAACTG  1
Cupriavidus_basilensis_4 (   22) CTGTATAAATATACAGTGTTTG  1
Klebsiella_oxytoca_M5al_ (   24) CTGTACGAAAACACAGTAATGG  1
Pseudomonas_fluorescens_ (   17) CTGTACAAAAACACAGTATTTT  1
Pseudomonas_fluorescens_ (   18) CTGTACAAAAACACAGTGTTTT  1
Shigella_flexneri_ATCC70 (   26) CTGTACACAATAACAGTAATGG  1
Escherichia_coli_BW25113 (   26) CTGTACACAATAACAGTAATGG  1
Escherichia_fergusonii_A (   16) CTGTACACAATAACAGTAATGG  1
Klebsiella_psneumoniae_A (   26) CTGTACGAAAACACAGTATTGG  1
Escherichia_coli_MG1655_ (   27) CTGTACACAATAACAGTAATGG  1
Herbaspirillum_seropedic (   24) CTGTATATAAATACAGTATTGT  1
Providencia_stuartii_ATC (   15) CTGTATGCATATACAGTAACTG  1
Paraburkholderia_phytofi (   19) CTGTACAAATATACAGTGTTGG  1
Paraburkholderia_phytofi (   29) CTGTATAAAAATACAGTCACCT  1
Cupriavidus_basilensis_4 (   20) CTGTATAAACATACAGTATCCG  1
Pseudomonas_fluorescens_ (   15) CTGTACAAAAACACAGTATATT  1
Pseudomonas_simiae_WCS41 (   28) CTGTACAAAAACACAGTATAGT  1
Shewanella_amazonensis_S (   17) CTGTATAAATATACAGTTATTG  1
Shewanella_amazonensis_S (   17) CTGTATATACTGACAGTAACTG  1
Herbaspirillum_seropedic (   20) CTGTATGCATACACAGTATTTT  1
Klebsiella_oxytoca_M5al_ (   25) CTGTATATATAAACAGTGTTTA  1
Enterobacter_cloacae_ATC (   20) CTGTACAAAAACACAGTATAGA  1
Burkholderia_bryophila_3 (   20) CTGTATAAAAAAACAGTGGTTT  1
Salmonella_enterica_LT2_ (   26) CTGTATTTAATTACAGTCATGG  1
Paraburkholderia_phytofi (   20) CTGTATAAATTCACAGTACTGT  1
Escherichia_coli_MG1655_ (   11) CTGTATAAATAAACAGTAATAT  1
Klebsiella_oxytoca_M5al_ (   26) CTGTATATACATACAGTATTCA  1
Burkholderia_bryophila_3 (   29) CTGTATAAAAATACAGGCACCT  1
Aliivibrio_fischeri_ATCC (   20) CTGTATAAATACACACTGTATG  1
Citrobacter_koseri_ATCCB (   24) CTGTATATAAAACCAGTGGTTA  1
Klebsiella_psneumoniae_A (   27) CTGTATATAAAAACAGTGTTAA  1
Cupriavidus_basilensis_4 (   14) CTGTATAAAATCACAGCATACT  1
Aliivibrio_fischeri_ATCC (   18) CTGTATATTTAAACAGTGTTTA  1
Salmonella_enterica_LT2_ (   14) CTGTATGCATATACAGTTAATT  1
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif lexA MEME-1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 22 n= 3900 bayes= 7.40984 E= 2.4e-218
 -1229    245  -1229  -1229
 -1229  -1229  -1229    166
 -1229  -1229    245  -1229
 -1229  -1229  -1229    166
   166  -1229  -1229  -1229
 -1229     39  -1229    126
   144  -1229    -61   -398
    41    -39  -1229     47
   163  -1229  -1229   -398
    87    -87  -1229      1
    82  -1229  -1229     47
   -40    127   -319     -8
   137     -2  -1229  -1229
 -1229    245  -1229  -1229
   166  -1229  -1229  -1229
 -1229   -319    242  -1229
 -1229   -319   -319    160
    60     61     13   -298
    82   -319   -219     26
  -118    105  -1229     60
  -298    -87     51     92
  -140  -1229    176    -29
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif lexA MEME-1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 22 nsites= 50 E= 2.4e-218
 0.000000  1.000000  0.000000  0.000000
 0.000000  0.000000  0.000000  1.000000
 0.000000  0.000000  1.000000  0.000000
 0.000000  0.000000  0.000000  1.000000
 1.000000  0.000000  0.000000  0.000000
 0.000000  0.240000  0.000000  0.760000
 0.860000  0.000000  0.120000  0.020000
 0.420000  0.140000  0.000000  0.440000
 0.980000  0.000000  0.000000  0.020000
 0.580000  0.100000  0.000000  0.320000
 0.560000  0.000000  0.000000  0.440000
 0.240000  0.440000  0.020000  0.300000
 0.820000  0.180000  0.000000  0.000000
 0.000000  1.000000  0.000000  0.000000
 1.000000  0.000000  0.000000  0.000000
 0.000000  0.020000  0.980000  0.000000
 0.000000  0.020000  0.020000  0.960000
 0.480000  0.280000  0.200000  0.040000
 0.560000  0.020000  0.040000  0.380000
 0.140000  0.380000  0.000000  0.480000
 0.040000  0.100000  0.260000  0.600000
 0.120000  0.000000  0.620000  0.260000
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif lexA MEME-1 regular expression
--------------------------------------------------------------------------------
CTGTA[TC]A[TA]A[AT][AT][CTA]ACAGT[ACG][AT][TC][TG][GT]
--------------------------------------------------------------------------------




Time  4.82 secs.

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