********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get
a copy of the MEME software please access http://meme-suite.org .

This file may be used as input to the MAST algorithm for searching
sequence databases for matches to groups of motifs.  MAST is available
for interactive use and downloading at http://meme-suite.org .
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REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to discover
motifs in biopolymers", Proceedings of the Second International
Conference on Intelligent Systems for Molecular Biology, pp. 28-36,
AAAI Press, Menlo Park, California, 1994.
********************************************************************************


********************************************************************************
TRAINING SET
********************************************************************************
DATAFILE= cpxR_A-AAACGCAG_summits_combined_sorted.fasta
ALPHABET= ACGT
Sequence name            Weight Length  Sequence name            Weight Length
-------------            ------ ------  -------------            ------ ------
Escherichia_coli_MG1655_ 1.0000     60  Aliivibrio_fischeri_ATCC 1.0000     60
Echinicola_vietnamensis_ 1.0000     60  Shewanella_amazonensis_S 1.0000     60
Aliivibrio_fischeri_ATCC 1.0000     60  Shewanella_sp_ANA-3_cpxR 1.0000     60
Escherichia_coli_BW25113 1.0000     60  Haemophilus_influenzae_A 1.0000     60
Shewanella_sp_ANA-3_cpxR 1.0000     60  Salmonella_enterica_LT2_ 1.0000     60
Shewanella_oneidensis_MR 1.0000     60  Shewanella_amazonensis_S 1.0000     60
Sinorhizobium_meliloti_1 1.0000     60  Sphingobacteriaceae_sp_G 1.0000     60
Marinobacter_adhaerens_H 1.0000     60  Echinicola_vietnamensis_ 1.0000     60
Klebsiella_psneumoniae_A 1.0000     60  Sphingobacteriaceae_sp_G 1.0000     60
Shewanella_oneidensis_MR 1.0000     60  Pseudomonas_putida_KT244 1.0000     60
Saccharophagus_degradans 1.0000     60  Sphingobacteriaceae_sp_G 1.0000     60
Escherichia_fergusonii_A 1.0000     60  Providencia_stuartii_ATC 1.0000     60
Shewanella_loihica_PV-4_ 1.0000     60  Haemophilus_influenzae_A 1.0000     60
Klebsiella_psneumoniae_A 1.0000     60  Escherichia_coli_MG1655_ 1.0000     60
Shewanella_sp_ANA-3_cpxR 1.0000     60  Salmonella_enterica_LT2_ 1.0000     60
Providencia_stuartii_ATC 1.0000     60  Marinobacter_adhaerens_H 1.0000     60
Pseudomonas_aeruginosa_P 1.0000     60  Aliivibrio_fischeri_ATCC 1.0000     60
Sphingobacteriaceae_sp_G 1.0000     60  Herbaspirillum_seropedic 1.0000     60
Shewanella_amazonensis_S 1.0000     60  Shewanella_sp_ANA-3_cpxR 1.0000     60
Shewanella_oneidensis_MR 1.0000     60  Kangiella_aquimarina_DSM 1.0000     60
Paraburkholderia_phytofi 1.0000     60  Saccharophagus_degradans 1.0000     60
Sphingobacteriaceae_sp_G 1.0000     60  Sphingobacteriaceae_sp_G 1.0000     60
Pontibacter_actiniarum_K 1.0000     60  Escherichia_coli_MG1655_ 1.0000     60
Aliivibrio_fischeri_ATCC 1.0000     60  Aliivibrio_fischeri_ATCC 1.0000     60
Pontibacter_actiniarum_K 1.0000     60  Escherichia_coli_MG1655_ 1.0000     60
Aliivibrio_fischeri_ATCC 1.0000     60  Enterobacter_cloacae_ATC 1.0000     60
Klebsiella_psneumoniae_A 1.0000     60  Aliivibrio_fischeri_ATCC 1.0000     60
Echinicola_vietnamensis_ 1.0000     60  Escherichia_fergusonii_A 1.0000     60
Kangiella_aquimarina_DSM 1.0000     60  Aliivibrio_fischeri_ATCC 1.0000     60
Pontibacter_actiniarum_K 1.0000     60  Sphingobacteriaceae_sp_G 1.0000     60
Enterobacter_cloacae_ATC 1.0000     60  Klebsiella_psneumoniae_A 1.0000     60
Shewanella_oneidensis_MR 1.0000     60  Enterobacter_cloacae_ATC 1.0000     60
Shewanella_loihica_PV-4_ 1.0000     60  Pontibacter_actiniarum_K 1.0000     60
Shigella_flexneri_ATCC70 1.0000     60  Kangiella_aquimarina_DSM 1.0000     60
Saccharophagus_degradans 1.0000     60  Saccharophagus_degradans 1.0000     60
Sphingobacteriaceae_sp_G 1.0000     60  Escherichia_fergusonii_A 1.0000     60
Citrobacter_koseri_ATCCB 1.0000     60  Salmonella_enterica_LT2_ 1.0000     60
Echinicola_vietnamensis_ 1.0000     60  Providencia_stuartii_ATC 1.0000     60
Sphingobacteriaceae_sp_G 1.0000     60  Pseudomonas_fluorescens_ 1.0000     60
Providencia_stuartii_ATC 1.0000     60  Saccharophagus_degradans 1.0000     60
Escherichia_coli_BW25113 1.0000     60  Citrobacter_koseri_ATCCB 1.0000     60
Pseudomonas_simiae_WCS41 1.0000     60  Enterobacter_cloacae_ATC 1.0000     60
Pseudomonas_simiae_WCS41 1.0000     60  Shewanella_amazonensis_S 1.0000     60
Citrobacter_koseri_ATCCB 1.0000     60  Enterobacter_cloacae_ATC 1.0000     60
Pseudomonas_putida_KT244 1.0000     60  Citrobacter_koseri_ATCCB 1.0000     60
Salmonella_enterica_LT2_ 1.0000     60  Shewanella_sp_ANA-3_cpxR 1.0000     60
Aliivibrio_fischeri_ATCC 1.0000     60  Escherichia_coli_MG1655_ 1.0000     60
Escherichia_coli_MG1655_ 1.0000     60  Aliivibrio_fischeri_ATCC 1.0000     60
Escherichia_coli_BW25113 1.0000     60  Klebsiella_oxytoca_M5al_ 1.0000     60
Providencia_stuartii_ATC 1.0000     60  Escherichia_fergusonii_A 1.0000     60
********************************************************************************

********************************************************************************
COMMAND LINE SUMMARY
********************************************************************************
This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme cpxR_A-AAACGCAG_summits_combined_sorted.fasta -oc cpxR_A-AAACGCAG_motifs_summits -dna -revcomp -mod anr -nmotifs 3 -minw 8 -maxw 32 -maxsize 1000000

model:  mod=           anr    nmotifs=         3    evt=           inf
object function=  E-value of product of p-values
width:  minw=            8    maxw=           32
width:  wg=             11    ws=              1    endgaps=       yes
nsites: minsites=        2    maxsites=       50    wnsites=       0.8
theta:  spmap=         uni    spfuzz=        0.5
global: substring=     yes    branching=      no    wbranch=        no
em:     prior=   dirichlet    b=            0.01    maxiter=        50
        distance=    1e-05
data:   n=            6000    N=             100    shuffle=        -1
strands: + -
sample: seed=            0    ctfrac=         -1    maxwords=       -1
Letter frequencies in dataset:
A 0.341 C 0.159 G 0.159 T 0.341
Background letter frequencies (from dataset with add-one prior applied):
A 0.341 C 0.159 G 0.159 T 0.341
********************************************************************************


********************************************************************************
MOTIF cpxR MEME-1	width =  21  sites =  50  llr = 694  E-value = 9.9e-119
********************************************************************************
--------------------------------------------------------------------------------
	Motif cpxR MEME-1 Description
--------------------------------------------------------------------------------
Simplified        A  3:::a182645:::a:95544
pos.-specific     C  41:::912::51:::a:2:23
probability       G  2::1::121::::3::11::2
matrix            T  19a9:::446:9a7:::3541

         bits    2.7                *
                 2.4                *
                 2.1      *         *
                 1.9      *         *
Relative         1.6     **        **
Entropy          1.3   * **     ** **
(20.0 bits)      1.1  *****     ** ***
                 0.8  ******   *******
                 0.5  ******  ******** *
                 0.3 ******* ********* ***
                 0.0 ---------------------

Multilevel           CTTTACATATATTTACAATTA
consensus            A      CTAC  G   TAAC
sequence             G      A            G

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif cpxR MEME-1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name            Strand  Start   P-value                    Site
-------------            ------  ----- ---------            ---------------------
Haemophilus_influenzae_A     -     29  1.75e-10 CAAGAAAAAT CTTTACATTTCTTTACAAATC TTTACATTTC
Sinorhizobium_meliloti_1     -     29  6.29e-09 GGCGCCGCGG CTTTACATTTCTTTACATTCG CCCAGAACGG
Sphingobacteriaceae_sp_G     -     14  1.43e-08 TAAACATTTT ATTTACAGATATTTACAATCC ATTTTACAAG
Citrobacter_koseri_ATCCB     -     19  1.71e-08 TGTTAATGTC ATTTACAGAAATTGACAATTC AGATGCCCTT
Escherichia_coli_BW25113     +     28  2.38e-08 TGTTAACGTC ATTTACAGAAATTGACACATC AGATGCCTGC
Escherichia_coli_MG1655_     +     27  2.38e-08 TGTTAACGTC ATTTACAGAAATTGACACATC AGATGCCTGC
Shewanella_sp_ANA-3_cpxR     +     24  2.79e-08 ATTTAATCAT CTTTACACGAATTTACAATTC AGCGTGACTT
Aliivibrio_fischeri_ATCC     +     22  3.25e-08 AAAATGTGAT CTTTACGTTTCTTGACACAAA AACAGATTAC
Escherichia_fergusonii_A     -     19  4.91e-08 TGTTAACGTC GTTTACAGAAATTGACAGTTC AGATGCCAGA
Shewanella_sp_ANA-3_cpxR     -     15  4.91e-08 ACTCCACTTT TTTTACATAACTTTACAAATA GGGTTGACAT
Pseudomonas_simiae_WCS41     +     24  5.59e-08 CCGGGCCAAC CTTTACCTAACTTGACATTCA GTTAACCGCA
Marinobacter_adhaerens_H     -     17  5.59e-08 GTTTGTTGTG GTTTACAAAAATTTACAAAAA AGTCGTTGCC
Salmonella_enterica_LT2_     +     29  7.09e-08 TGTTAATGTC ATTTACAGAAATTGACAGTAC AGATACCTGC
Shewanella_amazonensis_S     +     27  7.09e-08 ATTTGCTTTT CTTTACGGTAATTTACAATTG CTGGTGATGG
Salmonella_enterica_LT2_     -     20  7.99e-08 TGCATTGTTT GTTGACATTTCTTTACATAAA GGCGGGGGAA
Shewanella_oneidensis_MR     +     27  8.96e-08 ACTCCACTTT TTTTACATAACTTTACATATA GGGTTGACGT
Haemophilus_influenzae_A     -     18  1.11e-07 CAAATAATTT CCTGACAAATCTTTACAAAAA TGAATTTTTG
Escherichia_fergusonii_A     +     13  1.11e-07 GACTACCAGG ATTGACATAAATTGACAAATA TTGAATTTTC
Paraburkholderia_phytofi     +     28  1.37e-07 GCGACACCAC ATTGACAATTCTTGACACATG ATTTGGCGGC
Echinicola_vietnamensis_     -     38  1.37e-07         AT ATTTACAGGTATTGACAAAAA TATTTACAAA
Shewanella_oneidensis_MR     +     10  1.52e-07  TCAATCGGG GCTTACATTAATTGACAATAA GCAAATCCGC
Aliivibrio_fischeri_ATCC     +     14  1.52e-07 GTAACGCCGT CTTTACCTTTCTTTACGAATG CAAAGAATGT
Klebsiella_psneumoniae_A     +     18  1.67e-07 ATCCGGTTTT TTTTACCCTTCTTTACACAAC TTTAATTTAT
Echinicola_vietnamensis_     +     32  1.67e-07 GACACCAAAC GTTTACGAATATTTACACTTA TTGAATTT
Aliivibrio_fischeri_ATCC     -     25  2.03e-07 TATATAAAAT CTTTACACATATTTACCAAAA TAGGACAACA
Aliivibrio_fischeri_ATCC     -      7  2.23e-07 GTTGTATAAG CTTTACAGAAACTGACAGATA GAAAGG
Escherichia_fergusonii_A     -     28  2.44e-07 ATCCGGTTTT TTTTACCTTTCTTTACACATA ATTTTCCCGC
Sphingobacteriaceae_sp_G     +     19  2.44e-07 TTTTTCTTCG CGTTACAAAACTTTACAAATG CTTTTGGAAG
Providencia_stuartii_ATC     +     20  2.44e-07 ATTTAGAAAA ATTTAAACTTCTTTACAATTC AAAAAAGCCT
Salmonella_enterica_LT2_     +     23  2.68e-07 AGTGCATTTT CTTTAAACTTCTTTACATTAG GTTAGGCAAA
Enterobacter_cloacae_ATC     -     15  2.68e-07 GCTGCGTTAT CTTTAAACTTCTTTACATAAG GTAAGGCAAC
Saccharophagus_degradans     -     26  2.68e-07 AGTTTAACCG GTTTACACAAACTTACATTCA GTCAGCTTAA
Escherichia_coli_MG1655_     +     23  2.68e-07 GCGCGCTTTT CTTTAAACTTCTTTACATTAG GTTATGTAAA
Saccharophagus_degradans     -     21  2.68e-07 AACGATTAAA ATTTACATAAATTTACGCTAA AAACAGGGGT
Echinicola_vietnamensis_     -     16  2.68e-07 TGACAAAAAT ATTTACAAATATTTACAAAAT GTGACAAAAG
Echinicola_vietnamensis_     -     22  2.94e-07 AAACCAATTG ATTTACAAATACTTACATTAC AAGTTATATC
Klebsiella_psneumoniae_A     +     27  3.21e-07 CCGAGGCCGC CTTTACGTTTATTTACGATTA AAAATAAACA
Enterobacter_cloacae_ATC     -     16  3.51e-07 TGTGAATGAC TTTTACACAAACTGACAATTC GGATGCCGCC
Citrobacter_koseri_ATCCB     +     16  3.84e-07 ATTTATTTCA GCTGACAAAAATTGACAAAAC CTGAGATTAC
Shewanella_oneidensis_MR     +     26  3.84e-07 ATTTAAGGTT CTTTACATGAATTTACAATCT TGCGTGATAC
Saccharophagus_degradans     -     31  4.20e-07  ATTTGTAGG GTTTACAAATCTTCACATTCC TTAACGTTTG
Kangiella_aquimarina_DSM     -     15  4.20e-07 AAGATACTAT ATTTACACTGATTTACAAAAA AATTCAGCCT
Klebsiella_psneumoniae_A     +     23  4.57e-07 TTCAATGTTA ATTTACATATCTATACAAAAG AAATTCAAAT
Saccharophagus_degradans     +     27  4.99e-07 TGTATGCCAG ATTTACATTTCTTTACTTTTA CTTCGAAAAA
Sphingobacteriaceae_sp_G     +     25  5.43e-07 CCAACTACAG GTTTACGTTTCTTTACAGTTT ATGGTCCATG
Citrobacter_koseri_ATCCB     +     14  8.16e-07 ACATACAATC ACATACACATCTTTACATTTG GTGGTTTTCA
Aliivibrio_fischeri_ATCC     -     24  8.16e-07 ATCGATACAT CTATACATATCTTTACATAAT CACTTAGCTC
Shewanella_sp_ANA-3_cpxR     +     15  1.03e-06 CTTTCCCATC ATTTACCTATCTTTACTTTAA GTTTTTCATT
Providencia_stuartii_ATC     -     26  1.28e-06 TGCTTCTTTA CCTTACAATTGTTTACACTCA CATAACCTTA
Escherichia_fergusonii_A     -     14  2.49e-06 GAATGAAAGC GCTGACATATTTTTACAATCG TAAGAATTGA
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif cpxR MEME-1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
Haemophilus_influenzae_A          1.8e-10  28_[-1]_11
Sinorhizobium_meliloti_1          6.3e-09  28_[-1]_11
Sphingobacteriaceae_sp_G          1.4e-08  13_[-1]_26
Citrobacter_koseri_ATCCB          1.7e-08  18_[-1]_21
Escherichia_coli_BW25113          2.4e-08  27_[+1]_12
Escherichia_coli_MG1655_          2.4e-08  26_[+1]_13
Shewanella_sp_ANA-3_cpxR          2.8e-08  23_[+1]_16
Aliivibrio_fischeri_ATCC          3.3e-08  21_[+1]_18
Escherichia_fergusonii_A          4.9e-08  18_[-1]_21
Shewanella_sp_ANA-3_cpxR          4.9e-08  14_[-1]_25
Pseudomonas_simiae_WCS41          5.6e-08  23_[+1]_16
Marinobacter_adhaerens_H          5.6e-08  16_[-1]_23
Salmonella_enterica_LT2_          7.1e-08  28_[+1]_11
Shewanella_amazonensis_S          7.1e-08  26_[+1]_13
Salmonella_enterica_LT2_            8e-08  19_[-1]_20
Shewanella_oneidensis_MR            9e-08  26_[+1]_13
Haemophilus_influenzae_A          1.1e-07  17_[-1]_22
Escherichia_fergusonii_A          1.1e-07  12_[+1]_27
Paraburkholderia_phytofi          1.4e-07  27_[+1]_12
Echinicola_vietnamensis_          1.4e-07  15_[-1]_1_[-1]_2
Shewanella_oneidensis_MR          1.5e-07  9_[+1]_30
Aliivibrio_fischeri_ATCC          1.5e-07  13_[+1]_26
Klebsiella_psneumoniae_A          1.7e-07  17_[+1]_22
Echinicola_vietnamensis_          1.7e-07  31_[+1]_8
Aliivibrio_fischeri_ATCC            2e-07  24_[-1]_15
Aliivibrio_fischeri_ATCC          2.2e-07  6_[-1]_33
Escherichia_fergusonii_A          2.4e-07  27_[-1]_12
Sphingobacteriaceae_sp_G          2.4e-07  18_[+1]_21
Providencia_stuartii_ATC          2.4e-07  19_[+1]_20
Salmonella_enterica_LT2_          2.7e-07  22_[+1]_17
Enterobacter_cloacae_ATC          2.7e-07  14_[-1]_25
Saccharophagus_degradans          2.7e-07  25_[-1]_14
Escherichia_coli_MG1655_          2.7e-07  22_[+1]_17
Saccharophagus_degradans          2.7e-07  20_[-1]_19
Echinicola_vietnamensis_          2.9e-07  21_[-1]_18
Klebsiella_psneumoniae_A          3.2e-07  26_[+1]_13
Enterobacter_cloacae_ATC          3.5e-07  15_[-1]_24
Citrobacter_koseri_ATCCB          3.8e-07  15_[+1]_24
Shewanella_oneidensis_MR          3.8e-07  25_[+1]_14
Saccharophagus_degradans          4.2e-07  30_[-1]_9
Kangiella_aquimarina_DSM          4.2e-07  14_[-1]_25
Klebsiella_psneumoniae_A          4.6e-07  22_[+1]_17
Saccharophagus_degradans            5e-07  26_[+1]_13
Sphingobacteriaceae_sp_G          5.4e-07  24_[+1]_15
Citrobacter_koseri_ATCCB          8.2e-07  13_[+1]_26
Aliivibrio_fischeri_ATCC          8.2e-07  23_[-1]_16
Shewanella_sp_ANA-3_cpxR            1e-06  14_[+1]_25
Providencia_stuartii_ATC          1.3e-06  25_[-1]_14
Escherichia_fergusonii_A          2.5e-06  13_[-1]_26
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif cpxR MEME-1 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF cpxR width=21 seqs=50
Haemophilus_influenzae_A (   29) CTTTACATTTCTTTACAAATC  1
Sinorhizobium_meliloti_1 (   29) CTTTACATTTCTTTACATTCG  1
Sphingobacteriaceae_sp_G (   14) ATTTACAGATATTTACAATCC  1
Citrobacter_koseri_ATCCB (   19) ATTTACAGAAATTGACAATTC  1
Escherichia_coli_BW25113 (   28) ATTTACAGAAATTGACACATC  1
Escherichia_coli_MG1655_ (   27) ATTTACAGAAATTGACACATC  1
Shewanella_sp_ANA-3_cpxR (   24) CTTTACACGAATTTACAATTC  1
Aliivibrio_fischeri_ATCC (   22) CTTTACGTTTCTTGACACAAA  1
Escherichia_fergusonii_A (   19) GTTTACAGAAATTGACAGTTC  1
Shewanella_sp_ANA-3_cpxR (   15) TTTTACATAACTTTACAAATA  1
Pseudomonas_simiae_WCS41 (   24) CTTTACCTAACTTGACATTCA  1
Marinobacter_adhaerens_H (   17) GTTTACAAAAATTTACAAAAA  1
Salmonella_enterica_LT2_ (   29) ATTTACAGAAATTGACAGTAC  1
Shewanella_amazonensis_S (   27) CTTTACGGTAATTTACAATTG  1
Salmonella_enterica_LT2_ (   20) GTTGACATTTCTTTACATAAA  1
Shewanella_oneidensis_MR (   27) TTTTACATAACTTTACATATA  1
Haemophilus_influenzae_A (   18) CCTGACAAATCTTTACAAAAA  1
Escherichia_fergusonii_A (   13) ATTGACATAAATTGACAAATA  1
Paraburkholderia_phytofi (   28) ATTGACAATTCTTGACACATG  1
Echinicola_vietnamensis_ (   38) ATTTACAGGTATTGACAAAAA  1
Shewanella_oneidensis_MR (   10) GCTTACATTAATTGACAATAA  1
Aliivibrio_fischeri_ATCC (   14) CTTTACCTTTCTTTACGAATG  1
Klebsiella_psneumoniae_A (   18) TTTTACCCTTCTTTACACAAC  1
Echinicola_vietnamensis_ (   32) GTTTACGAATATTTACACTTA  1
Aliivibrio_fischeri_ATCC (   25) CTTTACACATATTTACCAAAA  1
Aliivibrio_fischeri_ATCC (    7) CTTTACAGAAACTGACAGATA  1
Escherichia_fergusonii_A (   28) TTTTACCTTTCTTTACACATA  1
Sphingobacteriaceae_sp_G (   19) CGTTACAAAACTTTACAAATG  1
Providencia_stuartii_ATC (   20) ATTTAAACTTCTTTACAATTC  1
Salmonella_enterica_LT2_ (   23) CTTTAAACTTCTTTACATTAG  1
Enterobacter_cloacae_ATC (   15) CTTTAAACTTCTTTACATAAG  1
Saccharophagus_degradans (   26) GTTTACACAAACTTACATTCA  1
Escherichia_coli_MG1655_ (   23) CTTTAAACTTCTTTACATTAG  1
Saccharophagus_degradans (   21) ATTTACATAAATTTACGCTAA  1
Echinicola_vietnamensis_ (   16) ATTTACAAATATTTACAAAAT  1
Echinicola_vietnamensis_ (   22) ATTTACAAATACTTACATTAC  1
Klebsiella_psneumoniae_A (   27) CTTTACGTTTATTTACGATTA  1
Enterobacter_cloacae_ATC (   16) TTTTACACAAACTGACAATTC  1
Citrobacter_koseri_ATCCB (   16) GCTGACAAAAATTGACAAAAC  1
Shewanella_oneidensis_MR (   26) CTTTACATGAATTTACAATCT  1
Saccharophagus_degradans (   31) GTTTACAAATCTTCACATTCC  1
Kangiella_aquimarina_DSM (   15) ATTTACACTGATTTACAAAAA  1
Klebsiella_psneumoniae_A (   23) ATTTACATATCTATACAAAAG  1
Saccharophagus_degradans (   27) ATTTACATTTCTTTACTTTTA  1
Sphingobacteriaceae_sp_G (   25) GTTTACGTTTCTTTACAGTTT  1
Citrobacter_koseri_ATCCB (   14) ACATACACATCTTTACATTTG  1
Aliivibrio_fischeri_ATCC (   24) CTATACATATCTTTACATAAT  1
Shewanella_sp_ANA-3_cpxR (   15) ATTTACCTATCTTTACTTTAA  1
Providencia_stuartii_ATC (   26) CCTTACAATTGTTTACACTCA  1
Escherichia_fergusonii_A (   14) GCTGACATATTTTTACAATCG  1
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif cpxR MEME-1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 21 n= 4000 bayes= 6.79908 E= 9.9e-119
     0    118     33   -177
 -1229    -41   -299    134
  -309  -1229  -1229    149
 -1229  -1229    -41    137
   155  -1229  -1229  -1229
  -209    253  -1229  -1229
   123    -67    -67  -1229
   -77     47     18     23
    72  -1229   -141     16
    23  -1229   -299     77
    49    159   -299   -409
 -1229    -99  -1229    143
  -409  -1229  -1229    152
 -1229   -299     81    104
   155  -1229  -1229  -1229
 -1229    265  -1229  -1229
   137   -299   -141   -309
    43     18    -99    -28
    49  -1229  -1229     61
    23      1  -1229     37
    30     81     47   -209
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif cpxR MEME-1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 21 nsites= 50 E= 9.9e-119
 0.340000  0.360000  0.200000  0.100000
 0.000000  0.120000  0.020000  0.860000
 0.040000  0.000000  0.000000  0.960000
 0.000000  0.000000  0.120000  0.880000
 1.000000  0.000000  0.000000  0.000000
 0.080000  0.920000  0.000000  0.000000
 0.800000  0.100000  0.100000  0.000000
 0.200000  0.220000  0.180000  0.400000
 0.560000  0.000000  0.060000  0.380000
 0.400000  0.000000  0.020000  0.580000
 0.480000  0.480000  0.020000  0.020000
 0.000000  0.080000  0.000000  0.920000
 0.020000  0.000000  0.000000  0.980000
 0.000000  0.020000  0.280000  0.700000
 1.000000  0.000000  0.000000  0.000000
 0.000000  1.000000  0.000000  0.000000
 0.880000  0.020000  0.060000  0.040000
 0.460000  0.180000  0.080000  0.280000
 0.480000  0.000000  0.000000  0.520000
 0.400000  0.160000  0.000000  0.440000
 0.420000  0.280000  0.220000  0.080000
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif cpxR MEME-1 regular expression
--------------------------------------------------------------------------------
[CAG]TTTACA[TCA][AT][TA][AC]TT[TG]ACA[AT][TA][TA][ACG]
--------------------------------------------------------------------------------




Time  4.91 secs.

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