anndata>=0.10
h5py>=3.11
matplotlib>=3.8
numpy>=1.26
pandas>=2.1
scikit-learn>=1.4
scipy>=1.11
seaborn>=0.13
torch>=2.3
tqdm>=4.66
umap-learn>=0.5

[dev]
build>=1.2
mypy>=1.9
pytest>=8.2
pytest-cov>=5.0
ruff>=0.5
twine>=5.0

[docs]
jupyter>=1.0
myst-nb>=1.1
pydata-sphinx-theme>=0.16
sphinx>=8.0
sphinx-autodoc-typehints>=2.3
sphinx-copybutton>=0.5
sphinx-design>=0.6

[foundation]
gdown>=5.2
platformdirs>=4.3
scanpy>=1.10

[notebook]
jupyter>=1.0

[scanpy]
scanpy>=1.10

[tutorials]
igraph>=0.11
jupyter>=1.0
scanpy>=1.10
