LICENSE
README.md
pyproject.toml
src/scdlkit/__init__.py
src/scdlkit/runner.py
src/scdlkit.egg-info/PKG-INFO
src/scdlkit.egg-info/SOURCES.txt
src/scdlkit.egg-info/dependency_links.txt
src/scdlkit.egg-info/requires.txt
src/scdlkit.egg-info/top_level.txt
src/scdlkit/adapters/__init__.py
src/scdlkit/adapters/base.py
src/scdlkit/adapters/classification.py
src/scdlkit/adapters/reconstruction.py
src/scdlkit/data/__init__.py
src/scdlkit/data/datasets.py
src/scdlkit/data/prepare.py
src/scdlkit/data/schemas.py
src/scdlkit/data/splits.py
src/scdlkit/evaluation/__init__.py
src/scdlkit/evaluation/compare.py
src/scdlkit/evaluation/evaluator.py
src/scdlkit/evaluation/metrics.py
src/scdlkit/evaluation/report.py
src/scdlkit/foundation/__init__.py
src/scdlkit/foundation/annotation.py
src/scdlkit/foundation/cache.py
src/scdlkit/foundation/data.py
src/scdlkit/foundation/lora.py
src/scdlkit/foundation/scgpt.py
src/scdlkit/models/__init__.py
src/scdlkit/models/autoencoder.py
src/scdlkit/models/base.py
src/scdlkit/models/blocks.py
src/scdlkit/models/classifier.py
src/scdlkit/models/denoising.py
src/scdlkit/models/registry.py
src/scdlkit/models/transformer.py
src/scdlkit/models/vae.py
src/scdlkit/tasks/__init__.py
src/scdlkit/tasks/base.py
src/scdlkit/tasks/classification.py
src/scdlkit/tasks/reconstruction.py
src/scdlkit/tasks/representation.py
src/scdlkit/training/__init__.py
src/scdlkit/training/callbacks.py
src/scdlkit/training/trainer.py
src/scdlkit/utils/__init__.py
src/scdlkit/utils/device.py
src/scdlkit/utils/io.py
src/scdlkit/utils/seed.py
src/scdlkit/visualization/__init__.py
src/scdlkit/visualization/classification.py
src/scdlkit/visualization/compare.py
src/scdlkit/visualization/latent.py
src/scdlkit/visualization/reconstruction.py
src/scdlkit/visualization/training.py
tests/test_adapters.py
tests/test_foundation_annotation.py
tests/test_foundation_scgpt.py
tests/test_models.py
tests/test_prepare.py
tests/test_quality_regression.py
tests/test_runner.py