.gitignore
CITATION.cff
CODE_OF_CONDUCT.md
CONTRIBUTING.md
Dockerfile
LICENCE.md
README.md
docker-compose.yml
docs-requirements.txt
mkdocs.yml
pyproject.toml
.github/PULL_REQUEST_TEMPLATE.md
.github/workflows/build_documentation.yml
.github/workflows/ci.yml
.github/workflows/deploy_documentation.yml
.github/workflows/publish.yml
assets/miade-logo.png
configs/miade_config.yaml
configs/miade_model_builder_config.yaml
docs/contributing.md
docs/index.md
docs/about/overview.md
docs/about/team.md
docs/api-reference/annotator.md
docs/api-reference/concept.md
docs/api-reference/dosage.md
docs/api-reference/dosageextractor.md
docs/api-reference/medsallergiesannotator.md
docs/api-reference/metaannotations.md
docs/api-reference/note.md
docs/api-reference/noteprocessor.md
docs/api-reference/problemsannotator.md
docs/assets/miade-logo-small.png
docs/assets/miade-logo.png
docs/user-guide/configurations.md
docs/user-guide/cookbook.md
docs/user-guide/quickstart.md
notebooks/build-vocab-embeddings.ipynb
notebooks/build_snomed_cdb.ipynb
notebooks/preproces_custom_problems.ipynb
src/miade/__init__.py
src/miade/annotators.py
src/miade/concept.py
src/miade/core.py
src/miade/dosage.py
src/miade/dosageextractor.py
src/miade/metaannotations.py
src/miade/note.py
src/miade/paragraph.py
src/miade.egg-info/PKG-INFO
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src/miade.egg-info/dependency_links.txt
src/miade.egg-info/entry_points.txt
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src/miade/data/allergens_subset.csv
src/miade/data/allergy_type.csv
src/miade/data/historic.csv
src/miade/data/multiwords.csv
src/miade/data/negated.csv
src/miade/data/patterns.csv
src/miade/data/problem_blacklist.csv
src/miade/data/reactions_subset.csv
src/miade/data/regex_para_chunk.csv
src/miade/data/singlewords.csv
src/miade/data/suspected.csv
src/miade/data/valid_meds.csv
src/miade/data/vtm_to_text.csv
src/miade/data/vtm_to_vmp.csv
src/miade/drugdoseade/__init__.py
src/miade/drugdoseade/entities_refiner.py
src/miade/drugdoseade/pattern_matcher.py
src/miade/drugdoseade/preprocessor.py
src/miade/drugdoseade/utils.py
src/miade/model_builders/__init__.py
src/miade/model_builders/cdbbuilder.py
src/miade/model_builders/preprocess_elg.py
src/miade/model_builders/preprocess_fdb.py
src/miade/model_builders/preprocess_snomeduk.py
src/miade/model_builders/vocabbuilder.py
src/miade/utils/__init__.py
src/miade/utils/annotatorconfig.py
src/miade/utils/logger.py
src/miade/utils/metaannotationstypes.py
src/miade/utils/miade_cat.py
src/miade/utils/miade_meta_cat.py
src/miade/utils/modelfactory.py
src/scripts/build_model_pack.py
src/scripts/miade.py
streamlit_app/.env
streamlit_app/Dockerfile
streamlit_app/README.md
streamlit_app/app.py
streamlit_app/utils.py
streamlit_app/samples/MedCAT_Export.json
streamlit_app/samples/problems_synthetic_train_example.csv
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tests/test_dosageextractor.py
tests/test_install.py
tests/test_note.py
tests/test_vocabbuilder.py
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tests/examples/example_snomed_sct2_20211124000001Z/Snapshot/Terminology/sct2_Description_Snapshot-en_example_20211124.txt