/target

# Python & build artifacts
__pycache__/
*.py[cod]
.venv/
*.egg-info/
dist/
build/

# Credentials, keys, and environment files
.env
.env.*
*.pem
*.key
*.token
id_*

# Distribution packages
*.whl
*.tar.gz

# Benchmark data files (keep base trajectory.pdb)
*.pdb
!trajectory.pdb
benchmarks/data/
test_*.py
!tests/test_*.py
*.dat
*.dcd

# Scratch scripts & temporary plot drafts
scripts/fair_dcd_benchmark.sh
scripts/generate_dcd.sh
scripts/render_complete_ecosystem_plot.py
scripts/render_new_features_plot.py
scripts/render_retro_vibrant_plot.py
scripts/render_standard_plots.py
scripts/run_complete_ecosystem_benchmark.py
scripts/run_retro_ecosystem_benchmark.py
scripts/setup_gnuplot_remote.sh
scripts/stress_test_new_features.sh
scripts/verify_new_features.sh
benchmarks/complete_ecosystem_comparison.png
benchmarks/retro_vibrant*
benchmarks/standard*
benchmarks/openfold_vs_strux*

# Generated in CI by compile_ptx.py (and locally by build.rs when nvcc is present)
src/cuda/kernels/qcp.ptx
