Metadata-Version: 2.1
Name: bio2bel
Version: 0.3.5
Summary: A package for converting biological data sources to BEL
Home-page: https://github.com/bio2bel/bio2bel
Author: Charles Tapley Hoyt
Author-email: cthoyt@gmail.com
Maintainer: Charles Tapley Hoyt
Maintainer-email: cthoyt@gmail.com
License: MIT
Download-URL: https://github.com/bio2bel/bio2bel/releases
Project-URL: Bug Tracker, https://github.com/bio2bel/bio2bel/issues
Project-URL: Source Code, https://github.com/bio2bel/bio2bel
Project-URL: Documentation, https://bio2bel.readthedocs.io
Keywords: Biological Expression Language,BEL,Domain Specific Language,DSL,Systems Biology,Networks Biology
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Chemistry
Requires-Python: >=3.7
Requires-Dist: sqlalchemy
Requires-Dist: click
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: tqdm
Requires-Dist: easy-config
Requires-Dist: pybel (<0.15.0,>=0.14.0)
Requires-Dist: bel-resources (>=0.0.3)
Provides-Extra: docs
Requires-Dist: sphinx ; extra == 'docs'
Requires-Dist: sphinx-rtd-theme ; extra == 'docs'
Requires-Dist: sphinx-click ; extra == 'docs'
Requires-Dist: sphinx-autodoc-typehints ; extra == 'docs'
Provides-Extra: web
Requires-Dist: flask ; extra == 'web'
Requires-Dist: flask-admin ; extra == 'web'
Requires-Dist: flask-bootstrap ; extra == 'web'

Bio2BEL |build| |coverage| |docs| |zenodo|
==========================================
Bio2BEL is a project aimed at bringing biological databases and other structured knowledge sources in a wide variety
of schemata into the unified framework of `Biological Expression Language <http://http://openbel.org/>`_ [1]_.

Two important places to look:

- `How to make a Bio2BEL Repository <http://bio2bel.readthedocs.io/en/latest/tutorial.html>`_
- `How to use the CLI <http://bio2bel.readthedocs.io/en/latest/cli.html>`_

Installation |pypi_version| |python_versions| |pypi_license|
------------------------------------------------------------
Download the latest stable code from `PyPI <https://pypi.org/project/bio2bel>`_ with:

.. code-block:: sh

   $ python3 -m pip install bio2bel

or get the latest from GitHub with:

.. code-block:: sh

   $ git clone https://github.com/bio2bel/bio2bel.git
   $ cd bio2bel
   $ python3 -m pip install -e .

or check the `installation instructions <http://bio2bel.readthedocs.io/en/latest/#installation>`_.

Citation
--------
If you find Bio2BEL useful for your work, please consider citing:

.. [1] Hoyt, C. T., *et al.* (2019). `Integration of Structured Biological Data Sources using Biological Expression Language
       <https://doi.org/10.1101/631812>`_. *bioRxiv*, 631812.

.. |build| image:: https://travis-ci.org/bio2bel/bio2bel.svg?branch=master
    :target: https://travis-ci.org/bio2bel/bio2bel
    :alt: Build Status

.. |coverage| image:: https://codecov.io/gh/bio2bel/bio2bel/coverage.svg?branch=master
    :target: https://codecov.io/gh/bio2bel/bio2bel?branch=master
    :alt: Coverage Status

.. |docs| image:: http://readthedocs.org/projects/bio2bel/badge/?version=latest
    :target: http://bio2bel.readthedocs.io/en/latest/?badge=latest
    :alt: Documentation Status

.. |python_versions| image:: https://img.shields.io/pypi/pyversions/bio2bel.svg
    :alt: Stable Supported Python Versions

.. |pypi_version| image:: https://img.shields.io/pypi/v/bio2bel.svg
    :alt: Current version on PyPI

.. |pypi_license| image:: https://img.shields.io/pypi/l/bio2bel.svg
    :alt: MIT License

.. |zenodo| image:: https://zenodo.org/badge/99800349.svg
    :target: https://zenodo.org/badge/latestdoi/99800349


