LICENSE.txt
MANIFEST.in
README.rst
pyproject.toml
setup.py
docs_v3/.DS_Store
docs_v3/Makefile
docs_v3/conf.py
docs_v3/index.rst
docs_v3/make.bat
docs_v3/_build/.DS_Store
docs_v3/_build/doctrees/environment.pickle
docs_v3/_build/doctrees/index.doctree
docs_v3/_build/html/.buildinfo
docs_v3/_build/html/genindex.html
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docs_v3/_build/html/objects.inv
docs_v3/_build/html/search.html
docs_v3/_build/html/searchindex.js
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docs_v3/_build/html/_sources/index.rst.txt
docs_v3/_build/html/_static/CPAT_comparison.png
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docs_v3/_build/html/_static/Human_10fold_sens_vs_spec.png
docs_v3/_build/html/_static/UQCR10.jpg
docs_v3/_build/html/_static/UQCR10.png
docs_v3/_build/html/_static/_sphinx_javascript_frameworks_compat.js
docs_v3/_build/html/_static/basic.css
docs_v3/_build/html/_static/basic_screenshot.png
docs_v3/_build/html/_static/cpat.png
docs_v3/_build/html/_static/doctools.js
docs_v3/_build/html/_static/documentation_options.js
docs_v3/_build/html/_static/file.png
docs_v3/_build/html/_static/hgt_genome_28e2b_b4e1f0.png
docs_v3/_build/html/_static/jquery.js
docs_v3/_build/html/_static/language_data.js
docs_v3/_build/html/_static/minus.png
docs_v3/_build/html/_static/plus.png
docs_v3/_build/html/_static/pygments.css
docs_v3/_build/html/_static/searchtools.js
docs_v3/_build/html/_static/sphinx_highlight.js
docs_v3/_build/html/_static/css/badge_only.css
docs_v3/_build/html/_static/css/theme.css
docs_v3/_build/html/_static/css/fonts/Roboto-Slab-Bold.woff
docs_v3/_build/html/_static/css/fonts/Roboto-Slab-Bold.woff2
docs_v3/_build/html/_static/css/fonts/Roboto-Slab-Regular.woff
docs_v3/_build/html/_static/css/fonts/Roboto-Slab-Regular.woff2
docs_v3/_build/html/_static/css/fonts/fontawesome-webfont.eot
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docs_v3/_build/html/_static/css/fonts/lato-normal-italic.woff2
docs_v3/_build/html/_static/css/fonts/lato-normal.woff
docs_v3/_build/html/_static/css/fonts/lato-normal.woff2
docs_v3/_build/html/_static/js/badge_only.js
docs_v3/_build/html/_static/js/html5shiv-printshiv.min.js
docs_v3/_build/html/_static/js/html5shiv.min.js
docs_v3/_build/html/_static/js/theme.js
docs_v3/_static/CPAT_comparison.png
docs_v3/_static/CPAT_performance.png
docs_v3/_static/Figure_1A_features_3D.png
docs_v3/_static/Figure_1_4features.png
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models/.Rapp.history
models/Fly_Hexamer.tsv
models/Fly_cutoff.txt
models/Fly_logitModel.RData
models/Human_Hexamer.tsv
models/Human_cutoff.txt
models/Human_logitModel.RData
models/Mouse_Hexamer.tsv
models/Mouse_cutoff.txt
models/Mouse_logitModel.RData
models/Zebrafish_logitModel.RData
models/zebrafish_Hexamer.tsv
models/zebrafish_cutoff.txt
src/.DS_Store
src/CPAT.egg-info/PKG-INFO
src/CPAT.egg-info/SOURCES.txt
src/CPAT.egg-info/dependency_links.txt
src/CPAT.egg-info/entry_points.txt
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src/cpmodule/FrameKmer.py
src/cpmodule/__init__.py
src/cpmodule/fickett.py
src/cpmodule/find_orfs.py
src/cpmodule/ireader.py
src/cpmodule/utils.py
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