LICENSE.txt
MANIFEST.in
PKG-INFO
readme.md
setup.py
.eggs/README.txt
.eggs/nose-1.3.7-py3.7.egg/EGG-INFO/DESCRIPTION.rst
.eggs/nose-1.3.7-py3.7.egg/EGG-INFO/PKG-INFO
.eggs/nose-1.3.7-py3.7.egg/EGG-INFO/RECORD
.eggs/nose-1.3.7-py3.7.egg/EGG-INFO/WHEEL
.eggs/nose-1.3.7-py3.7.egg/EGG-INFO/entry_points.txt
.eggs/nose-1.3.7-py3.7.egg/EGG-INFO/metadata.json
.eggs/nose-1.3.7-py3.7.egg/EGG-INFO/top_level.txt
.eggs/nose-1.3.7-py3.7.egg/man/man1/nosetests.1
.eggs/nose-1.3.7-py3.7.egg/nose/__init__.py
.eggs/nose-1.3.7-py3.7.egg/nose/__main__.py
.eggs/nose-1.3.7-py3.7.egg/nose/case.py
.eggs/nose-1.3.7-py3.7.egg/nose/commands.py
.eggs/nose-1.3.7-py3.7.egg/nose/config.py
.eggs/nose-1.3.7-py3.7.egg/nose/core.py
.eggs/nose-1.3.7-py3.7.egg/nose/exc.py
.eggs/nose-1.3.7-py3.7.egg/nose/failure.py
.eggs/nose-1.3.7-py3.7.egg/nose/importer.py
.eggs/nose-1.3.7-py3.7.egg/nose/inspector.py
.eggs/nose-1.3.7-py3.7.egg/nose/loader.py
.eggs/nose-1.3.7-py3.7.egg/nose/proxy.py
.eggs/nose-1.3.7-py3.7.egg/nose/pyversion.py
.eggs/nose-1.3.7-py3.7.egg/nose/result.py
.eggs/nose-1.3.7-py3.7.egg/nose/selector.py
.eggs/nose-1.3.7-py3.7.egg/nose/suite.py
.eggs/nose-1.3.7-py3.7.egg/nose/twistedtools.py
.eggs/nose-1.3.7-py3.7.egg/nose/usage.txt
.eggs/nose-1.3.7-py3.7.egg/nose/util.py
.eggs/nose-1.3.7-py3.7.egg/nose/ext/__init__.py
.eggs/nose-1.3.7-py3.7.egg/nose/ext/dtcompat.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/__init__.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/allmodules.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/attrib.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/base.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/builtin.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/capture.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/collect.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/cover.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/debug.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/deprecated.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/doctests.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/errorclass.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/failuredetail.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/isolate.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/logcapture.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/manager.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/multiprocess.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/plugintest.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/prof.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/skip.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/testid.py
.eggs/nose-1.3.7-py3.7.egg/nose/plugins/xunit.py
.eggs/nose-1.3.7-py3.7.egg/nose/sphinx/__init__.py
.eggs/nose-1.3.7-py3.7.egg/nose/sphinx/pluginopts.py
.eggs/nose-1.3.7-py3.7.egg/nose/tools/__init__.py
.eggs/nose-1.3.7-py3.7.egg/nose/tools/nontrivial.py
.eggs/nose-1.3.7-py3.7.egg/nose/tools/trivial.py
__pycache__/AberrantRead.cpython-37.pyc
__pycache__/BamToBed.cpython-37.pyc
__pycache__/Overlap.cpython-37.pyc
__pycache__/ReadFusion.cpython-37.pyc
__pycache__/bam_to_bed.cpython-37.pyc
__pycache__/getBamFiles.cpython-37.pyc
__pycache__/readcoord.cpython-37.pyc
bin/FusionVet.py
docs/.DS_Store
docs/Makefile
docs/index.rst
docs/make.bat
docs/build/doctrees/environment.pickle
docs/build/doctrees/index.doctree
docs/build/doctrees/input_file.doctree
docs/build/doctrees/installation.doctree
docs/build/doctrees/output_file.doctree
docs/build/doctrees/overview.doctree
docs/build/doctrees/performance.doctree
docs/build/doctrees/usage.doctree
docs/build/html/.buildinfo
docs/build/html/genindex.html
docs/build/html/index.html
docs/build/html/input_file.html
docs/build/html/installation.html
docs/build/html/objects.inv
docs/build/html/output_file.html
docs/build/html/overview.html
docs/build/html/performance.html
docs/build/html/search.html
docs/build/html/searchindex.js
docs/build/html/usage.html
docs/build/html/_images/ERG_TMPRSS2.png
docs/build/html/_images/Figure_1AB.png
docs/build/html/_images/Figure_1CD.png
docs/build/html/_images/Figure_1EF.png
docs/build/html/_images/Inter_chrom.png
docs/build/html/_images/Venn_5circles.png
docs/build/html/_images/workflow.png
docs/build/html/_sources/index.rst.txt
docs/build/html/_sources/input_file.rst.txt
docs/build/html/_sources/installation.rst.txt
docs/build/html/_sources/output_file.rst.txt
docs/build/html/_sources/overview.rst.txt
docs/build/html/_sources/performance.rst.txt
docs/build/html/_sources/usage.rst.txt
docs/build/html/_static/ERG_TMPRSS2.png
docs/build/html/_static/Figure_1AB.png
docs/build/html/_static/Figure_1CD.png
docs/build/html/_static/Figure_1EF.png
docs/build/html/_static/Inter_chrom.png
docs/build/html/_static/Venn_5circles.png
docs/build/html/_static/basic.css
docs/build/html/_static/doctools.js
docs/build/html/_static/documentation_options.js
docs/build/html/_static/file.png
docs/build/html/_static/hgt_genome_2efa1_140ab0.pdf
docs/build/html/_static/jquery-3.2.1.js
docs/build/html/_static/jquery.js
docs/build/html/_static/language_data.js
docs/build/html/_static/minus.png
docs/build/html/_static/plus.png
docs/build/html/_static/pygments.css
docs/build/html/_static/searchtools.js
docs/build/html/_static/underscore-1.3.1.js
docs/build/html/_static/underscore.js
docs/build/html/_static/workflow.png
docs/build/html/_static/workflow.pptx
docs/build/html/_static/~$workflow.pptx
docs/build/html/_static/css/badge_only.css
docs/build/html/_static/css/theme.css
docs/build/html/_static/fonts/Inconsolata-Bold.ttf
docs/build/html/_static/fonts/Inconsolata-Regular.ttf
docs/build/html/_static/fonts/Inconsolata.ttf
docs/build/html/_static/fonts/Lato-Bold.ttf
docs/build/html/_static/fonts/Lato-Regular.ttf
docs/build/html/_static/fonts/RobotoSlab-Bold.ttf
docs/build/html/_static/fonts/RobotoSlab-Regular.ttf
docs/build/html/_static/fonts/fontawesome-webfont.eot
docs/build/html/_static/fonts/fontawesome-webfont.svg
docs/build/html/_static/fonts/fontawesome-webfont.ttf
docs/build/html/_static/fonts/fontawesome-webfont.woff
docs/build/html/_static/fonts/fontawesome-webfont.woff2
docs/build/html/_static/fonts/Lato/lato-bold.eot
docs/build/html/_static/fonts/Lato/lato-bold.ttf
docs/build/html/_static/fonts/Lato/lato-bold.woff
docs/build/html/_static/fonts/Lato/lato-bold.woff2
docs/build/html/_static/fonts/Lato/lato-bolditalic.eot
docs/build/html/_static/fonts/Lato/lato-bolditalic.ttf
docs/build/html/_static/fonts/Lato/lato-bolditalic.woff
docs/build/html/_static/fonts/Lato/lato-bolditalic.woff2
docs/build/html/_static/fonts/Lato/lato-italic.eot
docs/build/html/_static/fonts/Lato/lato-italic.ttf
docs/build/html/_static/fonts/Lato/lato-italic.woff
docs/build/html/_static/fonts/Lato/lato-italic.woff2
docs/build/html/_static/fonts/Lato/lato-regular.eot
docs/build/html/_static/fonts/Lato/lato-regular.ttf
docs/build/html/_static/fonts/Lato/lato-regular.woff
docs/build/html/_static/fonts/Lato/lato-regular.woff2
docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.eot
docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.ttf
docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff
docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff2
docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.eot
docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.ttf
docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff
docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff2
docs/build/html/_static/js/modernizr.min.js
docs/build/html/_static/js/theme.js
docs/build/html/_static/workflow/Slide1.png
docs/source/.DS_Store
docs/source/conf.py
docs/source/index.rst
docs/source/input_file.rst
docs/source/installation.rst
docs/source/output_file.rst
docs/source/overview.rst
docs/source/performance.rst
docs/source/usage.rst
docs/source/_static/.DS_Store
docs/source/_static/ERG_TMPRSS2.png
docs/source/_static/Figure_1AB.png
docs/source/_static/Figure_1CD.png
docs/source/_static/Figure_1EF.png
docs/source/_static/Inter_chrom.png
docs/source/_static/Venn_5circles.png
docs/source/_static/hgt_genome_2efa1_140ab0.pdf
docs/source/_static/workflow.png
docs/source/_static/workflow.pptx
docs/source/_static/~$workflow.pptx
lib/FusionVet.egg-info/PKG-INFO
lib/FusionVet.egg-info/SOURCES.txt
lib/FusionVet.egg-info/dependency_links.txt
lib/FusionVet.egg-info/not-zip-safe
lib/FusionVet.egg-info/requires.txt
lib/FusionVet.egg-info/top_level.txt
lib/vetmodule/AberrantRead.py
lib/vetmodule/BamToBed.py
lib/vetmodule/GetBamFiles.py
lib/vetmodule/Overlap.py
lib/vetmodule/ReadFusion.py
lib/vetmodule/__init__.py
lib/vetmodule/bam_cigar.py
lib/vetmodule/__pycache__/AberrantRead.cpython-37.pyc
lib/vetmodule/__pycache__/BamToBed.cpython-37.pyc
lib/vetmodule/__pycache__/Overlap.cpython-37.pyc
lib/vetmodule/__pycache__/ReadFusion.cpython-37.pyc
lib/vetmodule/__pycache__/__init__.cpython-37.pyc