LICENSE
README.md
pyproject.toml
setup.py
versioneer.py
src/b2aiprep/__init__.py
src/b2aiprep/_version.py
src/b2aiprep/cli.py
src/b2aiprep/commands.py
src/b2aiprep/create_audio_files.py
src/b2aiprep/prepare_synthetic.py
src/b2aiprep/synthetic_data.py
src/b2aiprep.egg-info/PKG-INFO
src/b2aiprep.egg-info/SOURCES.txt
src/b2aiprep.egg-info/dependency_links.txt
src/b2aiprep.egg-info/entry_points.txt
src/b2aiprep.egg-info/requires.txt
src/b2aiprep.egg-info/top_level.txt
src/b2aiprep/dashboard/app.py
src/b2aiprep/dashboard/entrypoint.py
src/b2aiprep/dashboard/utils.py
src/b2aiprep/dashboard/pages/1_Demographics.py
src/b2aiprep/dashboard/pages/2_Subject_Questionnaires.py
src/b2aiprep/dashboard/pages/3_Audio.py
src/b2aiprep/dashboard/pages/4_Search.py
src/b2aiprep/dashboard/pages/5_Validate.py
src/b2aiprep/dashboard/pages/summary.py
src/b2aiprep/prepare/__init__.py
src/b2aiprep/prepare/bids.py
src/b2aiprep/prepare/constants.py
src/b2aiprep/prepare/data_validation.py
src/b2aiprep/prepare/dataset.py
src/b2aiprep/prepare/demographics.py
src/b2aiprep/prepare/derived_data.py
src/b2aiprep/prepare/fhir_utils.py
src/b2aiprep/prepare/phenotype.py
src/b2aiprep/prepare/prepare.py
src/b2aiprep/prepare/reproschema_to_redcap.py
src/b2aiprep/prepare/utils.py
src/b2aiprep/prepare/resources/__init__.py
src/b2aiprep/prepare/resources/all_columns.json
src/b2aiprep/prepare/resources/audio_filestem_to_exclude.json
src/b2aiprep/prepare/resources/column_mapping.json
src/b2aiprep/prepare/resources/column_mapping_labels_to_coded.json
src/b2aiprep/prepare/resources/participant_id_to_exclude.json
src/b2aiprep/prepare/resources/phenotype_json_descriptions.py
src/b2aiprep/prepare/resources/questionnaire2schema.json
src/b2aiprep/prepare/resources/static_features.json
src/b2aiprep/prepare/resources/unique_recordings.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/<license_name>.pdf
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/CHANGELOG.md
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/README.md
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/dataset_description.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/participants.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/participants.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/<measurement_tool_name>.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/<measurement_tool_name>.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/adhd.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/adhd.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/airwaystenosis.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/airwaystenosis.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/als.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/als.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/alzheimers.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/alzheimers.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/anxiety.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/anxiety.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/benignLesion.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/benignLesion.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/bipolar.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/bipolar.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/chronicCough.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/chronicCough.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/confounders.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/confounders.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/customAffectScale.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/customAffectScale.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/demographics.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/demographics.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/depression.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/depression.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/dsm5.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/dsm5.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/dyspnea.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/dyspnea.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/eligibility.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/eligibility.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/enrollment.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/enrollment.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/gad7.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/gad7.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/glotticinsufficiency.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/glotticinsufficiency.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/huntingtons.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/huntingtons.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/laryngealCancer.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/laryngealCancer.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/laryngealDystonia.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/laryngealDystonia.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/laryngitis.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/laryngitis.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/leicester.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/leicester.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/medical_conditions.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/medical_conditions.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/muscleTension.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/muscleTension.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/panas.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/panas.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/parkinsons.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/parkinsons.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/participant.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/participant.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/peds_voice_outcome_survey.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/peds_voice_outcome_survey.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/peds_voice_related_qol.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/peds_voice_related_qol.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/pedsvhi10.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/pedsvhi10.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/phq9.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/phq9.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/phqa.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/phqa.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/precancerousLesions.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/precancerousLesions.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/ptsd.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/ptsd.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/q_generic_demographics.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/q_generic_demographics.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/q_mood_participant_history.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/q_mood_participant_history.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/random.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/random.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/stroop.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/stroop.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/subjectparticipant_basic_information.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/subjectparticipant_basic_information.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/subjectparticipant_contact_information.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/subjectparticipant_contact_information.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/vhi10.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/vhi10.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/vocab.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/vocab.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/vocalFoldParalysis.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/vocalFoldParalysis.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/voicePerception.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/voicePerception.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/voiceSeverity.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/voiceSeverity.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/winograd.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/phenotype/winograd.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/sub-<participant_id>/sessions.tsv
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/sub-<participant_id>/ses-<another_session_id>/beh/sub-<participant_id>_ses-<session_id>_task-<task_name>_run-<index>_metadata.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/sub-<participant_id>/ses-<another_session_id>/beh/sub-<participant_id>_ses-<session_id>_task-<task_name>_run-<index>_response.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/sub-<participant_id>/ses-<another_session_id>/voice/sub-<participant_id>_ses-<session_id>_task-<task_name>_run-<index>_audio.wav
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/sub-<participant_id>/ses-<another_session_id>/voice/sub-<participant_id>_ses-<session_id>_task-<task_name>_run-<index>_features.pt
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/sub-<participant_id>/ses-<another_session_id>/voice/sub-<participant_id>_ses-<session_id>_task-<task_name>_run-<index>_metadata.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/sub-<participant_id>/ses-<another_session_id>/voice/sub-<participant_id>_ses-<session_id>_task-<task_name>_run-<index>_transcript.txt
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/sub-<participant_id>/ses-<session_id>/beh/sub-<participant_id>_ses-<session_id>_task-<task_name>_run-<index>_metadata.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/sub-<participant_id>/ses-<session_id>/beh/sub-<participant_id>_ses-<session_id>_task-<task_name>_run-<index>_response.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/sub-<participant_id>/ses-<session_id>/voice/sub-<participant_id>_ses-<session_id>_task-<task_name>_run-<index>_audio.wav
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/sub-<participant_id>/ses-<session_id>/voice/sub-<participant_id>_ses-<session_id>_task-<task_name>_run-<index>_features.pt
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/sub-<participant_id>/ses-<session_id>/voice/sub-<participant_id>_ses-<session_id>_task-<task_name>_run-<index>_metadata.json
src/b2aiprep/prepare/resources/b2ai-data-bids-like-template/sub-<participant_id>/ses-<session_id>/voice/sub-<participant_id>_ses-<session_id>_task-<task_name>_run-<index>_transcript.txt
src/b2aiprep/prepare/resources/instrument_columns/acoustic_tasks.json
src/b2aiprep/prepare/resources/instrument_columns/adhd.json
src/b2aiprep/prepare/resources/instrument_columns/airwaystenosis.json
src/b2aiprep/prepare/resources/instrument_columns/als.json
src/b2aiprep/prepare/resources/instrument_columns/alzheimers.json
src/b2aiprep/prepare/resources/instrument_columns/anxiety.json
src/b2aiprep/prepare/resources/instrument_columns/benignLesion.json
src/b2aiprep/prepare/resources/instrument_columns/bipolar.json
src/b2aiprep/prepare/resources/instrument_columns/chronicCough.json
src/b2aiprep/prepare/resources/instrument_columns/confounders.json
src/b2aiprep/prepare/resources/instrument_columns/customAffectScale.json
src/b2aiprep/prepare/resources/instrument_columns/demographics.json
src/b2aiprep/prepare/resources/instrument_columns/depression.json
src/b2aiprep/prepare/resources/instrument_columns/dsm5.json
src/b2aiprep/prepare/resources/instrument_columns/dyspnea.json
src/b2aiprep/prepare/resources/instrument_columns/eligibility.json
src/b2aiprep/prepare/resources/instrument_columns/enrollment.json
src/b2aiprep/prepare/resources/instrument_columns/gad7.json
src/b2aiprep/prepare/resources/instrument_columns/glotticinsufficiency.json
src/b2aiprep/prepare/resources/instrument_columns/huntingtons.json
src/b2aiprep/prepare/resources/instrument_columns/laryngealCancer.json
src/b2aiprep/prepare/resources/instrument_columns/laryngealDystonia.json
src/b2aiprep/prepare/resources/instrument_columns/laryngitis.json
src/b2aiprep/prepare/resources/instrument_columns/leicester.json
src/b2aiprep/prepare/resources/instrument_columns/medical_conditions.json
src/b2aiprep/prepare/resources/instrument_columns/mood_participant_history.json
src/b2aiprep/prepare/resources/instrument_columns/muscleTension.json
src/b2aiprep/prepare/resources/instrument_columns/panas.json
src/b2aiprep/prepare/resources/instrument_columns/parkinsons.json
src/b2aiprep/prepare/resources/instrument_columns/participant.json
src/b2aiprep/prepare/resources/instrument_columns/peds_voice_outcome_survey.json
src/b2aiprep/prepare/resources/instrument_columns/peds_voice_related_qol.json
src/b2aiprep/prepare/resources/instrument_columns/pedsvhi10.json
src/b2aiprep/prepare/resources/instrument_columns/phq9.json
src/b2aiprep/prepare/resources/instrument_columns/phqa_schema.json
src/b2aiprep/prepare/resources/instrument_columns/precancerousLesions.json
src/b2aiprep/prepare/resources/instrument_columns/ptsd.json
src/b2aiprep/prepare/resources/instrument_columns/q_generic_demographics.json
src/b2aiprep/prepare/resources/instrument_columns/random.json
src/b2aiprep/prepare/resources/instrument_columns/recordings.json
src/b2aiprep/prepare/resources/instrument_columns/sessions.json
src/b2aiprep/prepare/resources/instrument_columns/stroop.json
src/b2aiprep/prepare/resources/instrument_columns/subjectparticipant_basic_information.json
src/b2aiprep/prepare/resources/instrument_columns/subjectparticipant_contact_information.json
src/b2aiprep/prepare/resources/instrument_columns/vhi10.json
src/b2aiprep/prepare/resources/instrument_columns/vocab.json
src/b2aiprep/prepare/resources/instrument_columns/vocalFoldParalysis.json
src/b2aiprep/prepare/resources/instrument_columns/voicePerception.json
src/b2aiprep/prepare/resources/instrument_columns/voiceSeverity.json
src/b2aiprep/prepare/resources/instrument_columns/winograd.json
tests/test_bids.py
tests/test_cli.py
tests/test_dataset.py
tests/test_demographics.py
tests/test_derived_data.py
tests/test_generate_audio_features.py
tests/test_prepare.py
tests/test_resources.py
tests/test_ui2redcap_csv.py
tests/test_update_phenotype_jsons.py
tests/test_utils.py
tests/test_validate_data.py