Metadata-Version: 2.1
Name: bcl2fq-local
Version: 0.1.5
Summary: Bcl2fastq wrapper
Home-page: https://github.com/seahurt/bcl2fq-local
Author: Wang Jianghao
Author-email: haozi.vv@gmail.com
License: MIT
Description: # bcl2fq-local
        
        A bcl2fastq wrapper
        
        # Install
        ```bash
        pip install bcl2fq-local
        ```
        or 
        
        ```bash
        git clone URL
        cd bcl2fq-local
        python setup.py install
        
        ```
        
        # Usage
        ```text
        usage:  bcl2fq-local -i <seq_dir> -o <ou_dir>
            
        optional arguments:
            --sample-sheet Path  Using custom sample sheet file
            --mismatch N         Mismatch for barcode, default: 1
            --process N          Process number for demultiplexing and processing
            --io-process N       Process number for reading and writing
            --binpath   Path     Bcl2fastq binary file path
            --dry-run            Only print the cmd without running it
            --mask String        Use self defined mask, instead of 
            --mask-reads         Mask last few base of reads, default is: 0,0
            --mask-index         Mask last few base of index, default is: 0,0
            --version            Show  version info
        ```
        
        
Platform: CentOS 7.0+
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: System Administrators
Classifier: Operating System :: POSIX :: Linux
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Description-Content-Type: text/markdown
