.gitignore
.pre-commit-config.yaml
CHANGELOG.md
CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
codecov.yml
pyproject.toml
setup.cfg
setup.py
.github/workflows/black.yml
.github/workflows/publish.yml
.github/workflows/tests.yml
casanovo/__init__.py
casanovo/casanovo.py
casanovo/config.yaml
casanovo/utils.py
casanovo/version.py
casanovo.egg-info/PKG-INFO
casanovo.egg-info/SOURCES.txt
casanovo.egg-info/dependency_links.txt
casanovo.egg-info/entry_points.txt
casanovo.egg-info/requires.txt
casanovo.egg-info/top_level.txt
casanovo/data/__init__.py
casanovo/data/datasets.py
casanovo/data/ms_io.py
casanovo/denovo/__init__.py
casanovo/denovo/dataloaders.py
casanovo/denovo/evaluate.py
casanovo/denovo/model.py
casanovo/denovo/model_runner.py
docs/.gitkeep
sample_data/sample_preprocessed_spectra.mgf
tests/conftest.py
tests/test_integration.py
tests/test_unit.py