LICENSE
README.md
pyproject.toml
setup.py
genotools/__init__.py
genotools/__main__.py
genotools/dependencies.py
genotools/download_refs.py
genotools/imputation.py
genotools/utils.py
genotools/ancestry/__init__.py
genotools/ancestry/cohort.py
genotools/ancestry/config.py
genotools/ancestry/diagnostics.py
genotools/ancestry/fit_validation.py
genotools/ancestry/model.py
genotools/ancestry/plots.py
genotools/ancestry/preprocessing.py
genotools/ancestry/results.py
genotools/ancestry/reducers/__init__.py
genotools/ancestry/reducers/pca.py
genotools/ancestry/reducers/umap_reducer.py
genotools/cli/__init__.py
genotools/cli/output.py
genotools/cli/parser.py
genotools/cli/runner.py
genotools/container/Dockerfile
genotools/container/__init__.py
genotools/container/requirements.txt
genotools/container/run.py
genotools/core/__init__.py
genotools/core/config.py
genotools/core/exceptions.py
genotools/core/executors.py
genotools/core/genotypes.py
genotools/core/logging.py
genotools/core/provenance.py
genotools/core/validation.py
genotools/core/version.py
genotools/gwas/__init__.py
genotools/gwas/config.py
genotools/gwas/pipeline.py
genotools/gwas/results.py
genotools/gwas/steps/__init__.py
genotools/gwas/steps/association.py
genotools/gwas/steps/pca.py
genotools/qc/__init__.py
genotools/qc/config.py
genotools/qc/results.py
genotools/qc/steps/__init__.py
genotools/qc/steps/callrate.py
genotools/qc/steps/case_control.py
genotools/qc/steps/haplotype.py
genotools/qc/steps/heterozygosity.py
genotools/qc/steps/hwe.py
genotools/qc/steps/ld_prune.py
genotools/qc/steps/relatedness.py
genotools/qc/steps/sex.py
genotools/qc/steps/variant_missingness.py
the_real_genotools.egg-info/PKG-INFO
the_real_genotools.egg-info/SOURCES.txt
the_real_genotools.egg-info/dependency_links.txt
the_real_genotools.egg-info/entry_points.txt
the_real_genotools.egg-info/requires.txt
the_real_genotools.egg-info/top_level.txt