Metadata-Version: 2.1
Name: Topyfic
Version: 0.4.8
Summary: Topyfic is a Python package designed to identify reproducible latent dirichlet allocation (LDA) using leiden clustering and harmony for single cell epigenomics data
Home-page: https://github.com/mortazavilab/Topyfic
Download-URL: https://github.com/mortazavilab/Topyfic/archive/refs/tags/v0.4.8.tar.gz
Author: Narges Rezaie
Author-email: nargesrezaie80@gmail.com
License: MIT
Keywords: Cellular Programs,Latent Dirichlet allocation,single-cell multiome,single-cell RNA-seq,gene regulatory network,Topic Modeling,single-nucleus RNA-seq
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research 
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.8
Requires-Python: >=3.9
License-File: LICENSE.txt
Requires-Dist: pandas>=1.4.4
Requires-Dist: scikit-learn>=0.24.2
Requires-Dist: pytest
Requires-Dist: leidenalg
Requires-Dist: setuptools
Requires-Dist: anndata>=0.9.2
Requires-Dist: click>=8.0.4
Requires-Dist: gseapy>=1.0.5
Requires-Dist: joblib>=1.3.2
Requires-Dist: matplotlib>=3.7.2
Requires-Dist: networkx>=2.8.4
Requires-Dist: numpy>=1.24.4
Requires-Dist: reactome2py>=3.0.0
Requires-Dist: scanpy>=1.9.5
Requires-Dist: scikit_learn>=1.3.0
Requires-Dist: scipy>=1.11.2
Requires-Dist: seaborn>=0.11.2
Requires-Dist: statsmodels>=0.14.0
Requires-Dist: adjustText>=0.8
Requires-Dist: PyYAML>=6.0.1
Requires-Dist: click>=8.1.7
Requires-Dist: umap
Requires-Dist: obonet
Requires-Dist: plotly
