.coveralls.yml
.gitignore
.travis.yml
LICENSE
README.md
bld.bat
build.sh
distr.sh
requirements_apt.txt
requirements_conda.txt
requirements_pip.txt
setup.cfg
setup.py
.idea/bodynavigation.iml
.idea/misc.xml
.idea/modules.xml
.idea/vcs.xml
bodynavigation/__init__.py
bodynavigation/body_navigation.py
bodynavigation/chest_localization.py
bodynavigation/metrics.py
bodynavigation/organ_detection.py
bodynavigation/organ_detection_algo.py
bodynavigation/patlas.py
bodynavigation/results_drawer.py
bodynavigation/tools.py
bodynavigation/trainer3d.py
bodynavigation/transformation.py
bodynavigation.egg-info/PKG-INFO
bodynavigation.egg-info/SOURCES.txt
bodynavigation.egg-info/dependency_links.txt
bodynavigation.egg-info/requires.txt
bodynavigation.egg-info/top_level.txt
bodynavigation/files/3Dircadb1.json
bodynavigation/files/3Dircadb1_no-tumors.json
bodynavigation/files/3Dircadb2.json
bodynavigation/files/DATASETS.md
bodynavigation/files/__init__.py
bodynavigation/files/default_classifier.zip
bodynavigation/files/default_patlas.zip
bodynavigation/files/sliver07.json
doc/Organ_training_results/0-17_feature.png
doc/Organ_training_results/0-6_feature.png
doc/Organ_training_results/12-18_feature.png
doc/Organ_training_results/6-12_feature.png
doc/Organ_training_results/results_chest.json
doc/Organ_training_results/results_chest_ribs.json
doc/Organ_training_results/results_normal.json
doc/Organ_training_results/results_ribs.json
doc/chest_images/bone_area_filter-001.png
doc/chest_images/bone_step_hull-001.png
doc/chest_images/bone_step_or_lungs_internal_filter-001.png
doc/chest_images/final-area-filter-001.png
doc/chest_images/lungs_internal_filter-001.png
doc/chest_images/mask.png
doc/chest_images/z_osa_001-sliver.png
examples/Advanced segmentation.ipynb
examples/Organ training.ipynb
examples/Ribs and chest tutorial.ipynb
examples/Simple example.ipynb
examples/liver_localization_training_with_chest.ipynb
examples/organ_detection - example segmentation results.ipynb
examples/organ_detection.ipynb
examples/results_drawer.ipynb
examples/vipipmage2017.ipynb
scripts/batch_organ_detection.py
scripts/batch_organ_detection_analyze_results.py
tests/body_navigation_test.py
tests/body_navigation_test_generated_image.py
tests/organ_detection_test.py
tests/visualization_test.py