AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
alifedata_phyloinformatics_convert/RosettaTree.py
alifedata_phyloinformatics_convert/__init__.py
alifedata_phyloinformatics_convert/alife_dataframe_to_biopython_tree.py
alifedata_phyloinformatics_convert/alife_dataframe_to_biopython_trees.py
alifedata_phyloinformatics_convert/alife_dataframe_to_dendropy_tree.py
alifedata_phyloinformatics_convert/alife_dataframe_to_dendropy_trees.py
alifedata_phyloinformatics_convert/alife_dataframe_to_dict_of_lists.py
alifedata_phyloinformatics_convert/alife_dataframe_to_ete_tree.py
alifedata_phyloinformatics_convert/alife_dataframe_to_ete_trees.py
alifedata_phyloinformatics_convert/alife_dataframe_to_networkx_digraph.py
alifedata_phyloinformatics_convert/anytree_tree_to_alife_dataframe.py
alifedata_phyloinformatics_convert/biopython_tree_to_alife_dataframe.py
alifedata_phyloinformatics_convert/cli.py
alifedata_phyloinformatics_convert/dendropy_tree_to_alife_dataframe.py
alifedata_phyloinformatics_convert/dendropy_tree_to_scipy_linkage_matrix.py
alifedata_phyloinformatics_convert/ete_tree_to_alife_dataframe.py
alifedata_phyloinformatics_convert/networkx_digraph_to_alife_dataframe.py
alifedata_phyloinformatics_convert/scipy_linkage_matrix_to_dendropy_tree.py
alifedata_phyloinformatics_convert.egg-info/PKG-INFO
alifedata_phyloinformatics_convert.egg-info/SOURCES.txt
alifedata_phyloinformatics_convert.egg-info/dependency_links.txt
alifedata_phyloinformatics_convert.egg-info/entry_points.txt
alifedata_phyloinformatics_convert.egg-info/not-zip-safe
alifedata_phyloinformatics_convert.egg-info/requires.txt
alifedata_phyloinformatics_convert.egg-info/top_level.txt
alifedata_phyloinformatics_convert/_impl/__init__.py
alifedata_phyloinformatics_convert/_impl/alifestd_is_asexual.py
alifedata_phyloinformatics_convert/_impl/alifestd_is_sexual.py
alifedata_phyloinformatics_convert/_impl/alifestd_make_ancestor_id_col.py
alifedata_phyloinformatics_convert/_impl/alifestd_make_ancestor_list_col.py
alifedata_phyloinformatics_convert/_impl/all_unique.py
alifedata_phyloinformatics_convert/_impl/is_subset.py
alifedata_phyloinformatics_convert/_impl/parse_ancestor_list.py
alifedata_phyloinformatics_convert/_impl/rgetattr.py
alifedata_phyloinformatics_convert/_impl/try_alifestd_validate.py
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/readme.rst
docs/usage.rst
tests/__init__.py
tests/test_RosettaTree.py
tests/test_alife_dataframe_to_biopython_tree.py
tests/test_alife_dataframe_to_dendropy_tree.py
tests/test_alife_dataframe_to_dict_of_lists.py
tests/test_alife_dataframe_to_ete_tree.py
tests/test_alife_dataframe_to_networkx_digraph.py
tests/test_anytree_tree_to_alife_dataframe.py
tests/test_biopython_tree_to_alife_dataframe.py
tests/test_cli.py
tests/test_dendropy_tree_to_alife_dataframe.py
tests/test_dendropy_tree_to_scipy_linkage_matrix.py
tests/test_ete_tree_to_alife_dataframe.py
tests/test_networkx_digraph_to_alife_dataframe.py
tests/test_scipy_linkage_matrix_to_dendropy_tree.py
tests/assets/APG_Angiosperms.newick
tests/assets/alifedata.csv
tests/assets/alifedata.newick
tests/assets/alifedata.nexus
tests/assets/alifedata_empty.csv
tests/assets/alifedata_minimal.csv
tests/assets/alifedata_minimal_empty.csv
tests/assets/pythonidae.annotated.nexml
tests/assets/pythonidae.newick
tests/converted_fromalifedata/keep-unifurcations/alifedata.newick
tests/converted_fromalifedata/keep-unifurcations/alifedata.nexml
tests/converted_fromalifedata/keep-unifurcations/alifedata.nexus
tests/converted_fromalifedata/keep-unifurcations/alifedata_minimal.newick
tests/converted_fromalifedata/keep-unifurcations/alifedata_minimal.nexml
tests/converted_fromalifedata/keep-unifurcations/alifedata_minimal.nexus
tests/converted_fromalifedata/suppress-unifurcations/APG_Angiosperms.newick
tests/converted_fromalifedata/suppress-unifurcations/alifedata.newick
tests/converted_fromalifedata/suppress-unifurcations/alifedata.nexml
tests/converted_fromalifedata/suppress-unifurcations/alifedata.nexus
tests/converted_fromalifedata/suppress-unifurcations/alifedata_minimal.newick
tests/converted_fromalifedata/suppress-unifurcations/alifedata_minimal.nexml
tests/converted_fromalifedata/suppress-unifurcations/alifedata_minimal.nexus
tests/converted_toalifedata/APG_Angiosperms.csv
tests/converted_toalifedata/APG_Angiosperms.json
tests/converted_toalifedata/pythonidae.annotated.csv
tests/converted_toalifedata/pythonidae.annotated.json
tests/converted_toalifedata/keep-unifurcations/alifedata.csv
tests/converted_toalifedata/keep-unifurcations/alifedata.json
tests/converted_toalifedata/suppress-unifurcations/alifedata.csv
tests/converted_toalifedata/suppress-unifurcations/alifedata.json