Metadata-Version: 2.1
Name: Magphi
Version: 2.0.2
Summary: A bioinformatics tool allowing for examnination and extraction of genomic features using seed sequences.
Home-page: https://github.com/milnus/Magphi
Author: Magnus Ganer Jespersen
Author-email: magnus.ganer.j@gmail.com
License: MIT license
Keywords: Genomic,extraction,bacteria,prokaryotes,bioinformatics
Classifier: Programming Language :: Python :: 3.9
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Development Status :: 4 - Beta
License-File: LICENSE
Requires-Dist: biopython (>=1.79)
Requires-Dist: pybedtools (==0.8.2)

The program extracts regions of interest from Fasta or Genome Feature Format (GFF) genomes.
This is done given a set of seed sequences given as nucleotide strings in a multi-line fasta file.  
The program can output fasta and GFF outputs or regions, and will giv multiple outputs around regions and their evidence.

The program takes in multiple fasta or GFF files at a single time and can also take multiple seed sequence pairs.