Metadata-Version: 2.2
Name: amiga
Version: 3.0.0
Summary: Analysis of Microbial Growth Assays
Author-email: Firas Midani <fsm.promotions@gmail.com>
License: GNU GPL v3.0
Project-URL: Homepage, https://github.com/firasmidani/amiga
Project-URL: Documentation, https://firasmidani.github.io/amiga/
Project-URL: Repository, https://github.com/firasmidani/amiga
Project-URL: Issues, https://github.com/firasmidani/amiga/issues
Requires-Python: <3.13.0,>=3.12.0
Description-Content-Type: text/markdown
License-File: LICENSE.md
Requires-Dist: cycler==0.12.1
Requires-Dist: Cython==3.0.12
Requires-Dist: decorator==5.2.1
Requires-Dist: GPy==1.13.2
Requires-Dist: kiwisolver==1.4.8
Requires-Dist: matplotlib==3.10.1
Requires-Dist: numpy==1.26.4
Requires-Dist: pandas==2.2.3
Requires-Dist: paramz==0.9.6
Requires-Dist: pyparsing==3.2.1
Requires-Dist: python-dateutil==2.9.0.post0
Requires-Dist: pytz==2025.1
Requires-Dist: scipy==1.12.0
Requires-Dist: seaborn==0.13.2
Requires-Dist: six==1.17.0
Requires-Dist: tabulate==0.9.0

# AMiGA

**A**nalysis of **Mi**crobial **G**rowth **A**ssays is a user-friendly program for analysis of high-throughput microbial growth assays using Gaussian Process regression. Users can interact with `AMiGA` via a command-line interface.

## Documentation:

See [documentation](https://firasmidani.github.io/amiga) for tutorials, technical details, and examples.

## Installation:

See [Installation](https://firasmidani.github.io/amiga/doc/installation.html) for instructions and requirements.

## License

This project is covered under the [GPL-3 license](https://www.gnu.org/licenses/gpl-3.0.en.html).

## Bugs/Feature Requests

Please post issues [here](https://github.com/firasmidani/amiga/issues).

## Manuscript and Citation

FS Midani, J Collins, and RA Britton.  
__AMiGA: software for automated analysis of microbial growth assays.__  
*mSystems* (2021). [https://doi.org/10.1128/mSystems.00508-21](https://doi.org/10.1128/mSystems.00508-21)  

To reproduce analysis and figures in the manuscript, see [Manuscript README](https://github.com/firasmidani/amiga/blob/master/examples/manuscript/README.md). 
