MANIFEST.in
README.rst
setup.py
src/PyBiomech/__init__.py
src/PyBiomech/contacts.py
src/PyBiomech/fio.py
src/PyBiomech/kine.py
src/PyBiomech/kine_or.py
src/PyBiomech/ligaments.py
src/PyBiomech/mplh.py
src/PyBiomech/procedure_or.py
src/PyBiomech/procedure_spine.py
src/PyBiomech/procedure_sr.py
src/PyBiomech/rotations.py
src/PyBiomech/spine.py
src/PyBiomech/vtkh.py
src/PyBiomech.egg-info/PKG-INFO
src/PyBiomech.egg-info/SOURCES.txt
src/PyBiomech.egg-info/dependency_links.txt
src/PyBiomech.egg-info/requires.txt
src/PyBiomech.egg-info/top_level.txt
src/PyBiomech/_tests/test_io/landmarks.mimics.txt
src/PyBiomech/_tests/test_io/test_io.py
src/PyBiomech/examples/knee/full_processing/Native - PassiveFlexion Trial 1.c3d
src/PyBiomech/examples/knee/full_processing/femur.stl
src/PyBiomech/examples/knee/full_processing/landmarks.mimics.txt
src/PyBiomech/examples/knee/full_processing/main.py
src/PyBiomech/examples/knee/full_processing/params.json
src/PyBiomech/examples/knee/full_processing/splines.mimics.txt
src/PyBiomech/examples/knee/full_processing/tibia.stl
src/PyBiomech/examples/knee/test_ligament_methods_specA/main.py
src/PyBiomech/examples/knee/test_ligament_methods_specA/inputs/Native - PassiveFlexion Trial 1.c3d
src/PyBiomech/examples/knee/test_ligament_methods_specA/inputs/Native - PassiveFlexion Trial 2.c3d
src/PyBiomech/examples/knee/test_ligament_methods_specA/inputs/femur.stl
src/PyBiomech/examples/knee/test_ligament_methods_specA/inputs/landmarks.mimics.txt
src/PyBiomech/examples/knee/test_ligament_methods_specA/inputs/params.json
src/PyBiomech/examples/knee/test_ligament_methods_specA/inputs/splines.mimics.txt
src/PyBiomech/examples/knee/test_ligament_methods_specA/inputs/tibia.stl
src/PyBiomech/examples/knee/test_ligament_methods_specB/main.py
src/PyBiomech/examples/knee/test_ligament_methods_specB/inputs/Spec99_17_R_Native_OpenChain 1.c3d
src/PyBiomech/examples/knee/test_ligament_methods_specB/inputs/Spec99_17_R_Native_OpenChain 2.c3d
src/PyBiomech/examples/knee/test_ligament_methods_specB/inputs/Spec99_17_R_Native_OpenChain 4.c3d
src/PyBiomech/examples/knee/test_ligament_methods_specB/inputs/femur.stl
src/PyBiomech/examples/knee/test_ligament_methods_specB/inputs/landmarks.mimics.txt
src/PyBiomech/examples/knee/test_ligament_methods_specB/inputs/params.json
src/PyBiomech/examples/knee/test_ligament_methods_specB/inputs/splines.mimics.txt
src/PyBiomech/examples/knee/test_ligament_methods_specB/inputs/tibia.stl
src/PyBiomech/examples/knee/test_ligament_methods_specC/main.py
src/PyBiomech/examples/knee/test_ligament_methods_specC/inputs/Spec35_16_R_Native_PassiveFlexionExtension 1.c3d
src/PyBiomech/examples/knee/test_ligament_methods_specC/inputs/Spec35_16_R_Native_Squat 3.c3d
src/PyBiomech/examples/knee/test_ligament_methods_specC/inputs/femur.stl
src/PyBiomech/examples/knee/test_ligament_methods_specC/inputs/landmarks.mimics.txt
src/PyBiomech/examples/knee/test_ligament_methods_specC/inputs/params.json
src/PyBiomech/examples/knee/test_ligament_methods_specC/inputs/splines.mimics.txt
src/PyBiomech/examples/knee/test_ligament_methods_specC/inputs/splines.mimics_orig.txt
src/PyBiomech/examples/knee/test_ligament_methods_specC/inputs/tibia.stl
src/PyBiomech/examples/knee/with_patella/Spec11_16_R_Native_Squat 1.c3d
src/PyBiomech/examples/knee/with_patella/Spec11_GlobalCS_Landmarks.txt
src/PyBiomech/examples/knee/with_patella/femur.stl
src/PyBiomech/examples/knee/with_patella/main.py
src/PyBiomech/examples/knee/with_patella/patella.stl
src/PyBiomech/examples/knee/with_patella/tibia.stl
src/PyBiomech/examples/shoulder/full_processing/Passive Abduction01.c3d
src/PyBiomech/examples/shoulder/full_processing/Passive Abduction01.mat
src/PyBiomech/examples/shoulder/full_processing/Passive Abduction02.c3d
src/PyBiomech/examples/shoulder/full_processing/Passive Abduction02.mat
src/PyBiomech/examples/shoulder/full_processing/Passive Abduction03.c3d
src/PyBiomech/examples/shoulder/full_processing/Passive Abduction03.mat
src/PyBiomech/examples/shoulder/full_processing/humerus.stl
src/PyBiomech/examples/shoulder/full_processing/landmarks.mimics.txt
src/PyBiomech/examples/shoulder/full_processing/main.py
src/PyBiomech/examples/shoulder/full_processing/scapula.stl
src/PyBiomech/examples/shoulder/full_processing/test.m
src/PyBiomech/examples/spine/opto_EOS/20112017_560605v073_01.c3d
src/PyBiomech/examples/spine/opto_EOS/Cluster 1.txt
src/PyBiomech/examples/spine/opto_EOS/Cluster 2.txt
src/PyBiomech/examples/spine/opto_EOS/Cluster 3.txt
src/PyBiomech/examples/spine/opto_EOS/Cluster distances.xlsx
src/PyBiomech/examples/spine/opto_EOS/Cluster legenda old.txt
src/PyBiomech/examples/spine/opto_EOS/Cluster legenda.txt
src/PyBiomech/examples/spine/opto_EOS/EOS coordinates markers and landmarks - Template.xlsx
src/PyBiomech/examples/spine/opto_EOS/EOS.xlsx
src/PyBiomech/examples/spine/opto_EOS/ISB_part_I.pdf
src/PyBiomech/examples/spine/opto_EOS/ISB_part_II.pdf
src/PyBiomech/examples/spine/opto_EOS/Ignasiak 2017.pdf
src/PyBiomech/examples/spine/opto_EOS/Single markers.txt
src/PyBiomech/examples/spine/opto_EOS/Spine model ASD.pptx
src/PyBiomech/examples/spine/opto_EOS/pelvisDefGlobal.m
src/PyBiomech/examples/spine/opto_EOS/processed.c3d
src/PyBiomech/examples/spine/opto_EOS/spine_clusters.txt
src/PyBiomech/examples/spine/opto_EOS/spine_markers.txt
src/PyBiomech/examples/spine/opto_EOS/test.py
src/PyBiomech/examples/spine/opto_EOS/thoraxDefLL.m
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/main.py
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Global_marker_points.txt
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Left_SCM_Lateral_4.c3d
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Left_SCM_Lateral_4.txt
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Left_SCM_Lateral_4.xml
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Left_SCM_Surface_1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Left_SCM_Surface_1.txt
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Left_SCM_Surface_1.xml
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Left_SCM_Surface_5.c3d
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Left_SCM_Surface_5.txt
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Left_SCM_Surface_5.xml
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Leftclavicle.stl
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Right_SCM_Medial_1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Right_SCM_Medial_1.txt
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Right_SCM_Medial_1.xml
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Right_SCM_Surface_1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Right_SCM_Surface_1.txt
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Right_SCM_Surface_1.xml
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Right_SCM_Surface_2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Right_SCM_Surface_2.txt
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Right_SCM_Surface_2.xml
src/PyBiomech/examples/wand_tip_to_mimics/claviculae_features/files/Rightclavicle.stl
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/main.py
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/04-15-Right.stl
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/Spec04_right_ukaMB_femur_outerRidge.c3d
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/Spec04_right_ukaMB_femur_outerRidge.txt
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/Spec04_right_ukaMB_femur_outerRidge.xml
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/Spec04_right_ukaMB_femur_outerRidge_straight_line.xml
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/Spec04_right_ukaMB_femur_surface.c3d
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/Spec04_right_ukaMB_femur_surface.txt
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/Spec04_right_ukaMB_femur_surface.xml
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/Spec04_right_ukaMB_tibiatray_innerRidge.c3d
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/Spec04_right_ukaMB_tibiatray_innerRidge.txt
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/Spec04_right_ukaMB_tibiatray_innerRidge.xml
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/Spec04_right_ukaMB_tibiatray_innerRidge_straight_line.xml
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/Spec04_right_ukaMB_tibiatray_outerRidge.c3d
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/Spec04_right_ukaMB_tibiatray_outerRidge.txt
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/Spec04_right_ukaMB_tibiatray_outerRidge.xml
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/Spec04_right_ukaMB_tibiatray_outerRidge_straight_line.xml
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/Spec04_right_ukaMB_tibiatray_surface.c3d
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/Spec04_right_ukaMB_tibiatray_surface.txt
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/Spec04_right_ukaMB_tibiatray_surface.xml
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/Spec04_right_ukaMB_tibiatray_surface_proj_on_plane.xml
src/PyBiomech/examples/wand_tip_to_mimics/knee_features/files/Spec4_15R_GlobalCS_Landmarks.txt
src/PyBiomech/examples/wand_tip_to_mimics/point_single/FMCC.c3d
src/PyBiomech/examples/wand_tip_to_mimics/point_single/FMCC_tip.c3d
src/PyBiomech/examples/wand_tip_to_mimics/point_single/femur.stl
src/PyBiomech/examples/wand_tip_to_mimics/point_single/landmarks.mimics.txt
src/PyBiomech/examples/wand_tip_to_mimics/point_single/main.py
src/PyBiomech/examples/wand_tip_to_mimics/point_single/tip.txt
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/4_15Lnewsegmentation.stl
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/Spec4_15L_GlobalCS_Landmarks.txt
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/main.py
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage1_bottom_josh1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage1_bottom_josh2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage1_bottom_orcun1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage1_bottom_orcun2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage1_top_josh1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage1_top_josh2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage1_top_orcun1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage1_top_orcun2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage2_bottom_josh1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage2_bottom_josh2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage2_bottom_orcun1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage2_bottom_orcun2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage2_top_josh1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage2_top_josh2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage2_top_orcun1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage2_top_orcun2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage3_bottom_josh1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage3_bottom_josh2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage3_bottom_orcun1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage3_bottom_orcun2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage3_top_josh1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage3_top_josh2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage3_top_orcun1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor1_gage3_top_orcun2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage1_bottom_josh1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage1_bottom_josh2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage1_bottom_orcun1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage1_bottom_orcun2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage1_top_josh1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage1_top_josh2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage1_top_orcun1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage1_top_orcun2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage2_bottom_josh1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage2_bottom_josh2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage2_bottom_orcun1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage2_bottom_orcun2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage2_top_josh1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage2_top_josh2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage2_top_orcun1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage2_top_orcun2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage3_bottom_josh1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage3_bottom_josh2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage3_bottom_orcun1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage3_bottom_orcun2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage3_top_josh1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage3_top_josh2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage3_top_orcun1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor2_gage3_top_orcun2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage1_bottom_josh1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage1_bottom_josh2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage1_bottom_orcun1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage1_bottom_orcun2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage1_top_josh1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage1_top_josh2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage1_top_orcun1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage1_top_orcun2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage2_bottom_josh1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage2_bottom_josh2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage2_bottom_orcun1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage2_bottom_orcun2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage2_top_josh1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage2_top_josh2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage2_top_orcun1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage2_top_orcun2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage3_bottom_josh1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage3_bottom_josh2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage3_bottom_orcun1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage3_bottom_orcun2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage3_top_josh1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage3_top_josh2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage3_top_orcun1.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor3_gage3_top_orcun2.c3d
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/sensor_model.xml
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/tips.txt
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/tips.xml
src/PyBiomech/examples/wand_tip_to_mimics/sensors_group/wand_markers.txt