.gitattributes
.gitignore
LICENSE.txt
README.md
figure1.png
pytest.ini
setup.py
tutorial.ipynb
DCA.egg-info/PKG-INFO
DCA.egg-info/SOURCES.txt
DCA.egg-info/dependency_links.txt
DCA.egg-info/entry_points.txt
DCA.egg-info/requires.txt
DCA.egg-info/top_level.txt
data/biochemists-nb-coef.tsv
data/biochemists-nb-predictions.tsv
data/biochemists-zinb-coef.tsv
data/biochemists-zinb-predictions.tsv
data/biochemists.R
data/biochemists.tsv
data/test-biochemists-nb.py
data/test-biochemists-zinb-ae.py
data/test-biochemists-zinb.py
dca/__init__.py
dca/__main__.py
dca/api.py
dca/hyper.py
dca/io.py
dca/layers.py
dca/loss.py
dca/network.py
dca/test.py
dca/train.py
dca/utils.py
docs/Makefile
docs/source/conf.py
docs/source/index.rst
reproducibility/download.sh
reproducibility/code/Figure2.ipynb
reproducibility/code/Figure4.R
reproducibility/code/Figure5.R
reproducibility/code/Figure6.R
reproducibility/code/Figure8.R
reproducibility/code/Figure9.ipynb
reproducibility/code/ImputeUsingDCA.sh
reproducibility/code/ImputeUsingMAGIC.py
reproducibility/code/ImputeUsingSAVER.R
reproducibility/code/ImputeUsingSCIMPUTE.R
scripts/seurat.R
scripts/simulate.R