.flake8
.gitignore
CMakeLists.txt
LICENSE.txt
README.md
RELEASE.md
pyproject.toml
setup.py
.github/workflows/build-wheels.yml
.github/workflows/unit-tests.yml
.github/workflows/vcpkg.json
build-scripts/vcpkg-setup-linux.sh
build-scripts/vcpkg-setup-macos.sh
build-scripts/vcpkg.json
cmake/git_watcher.cmake
cmake/Modules/cmspandoc.cmake
cmake/Modules/pandocology.cmake
cpp/CMakeLists.txt
cpp/exec/CMakeLists.txt
cpp/exec/add_field.cpp
cpp/exec/psp_process.cpp
cpp/exec/upsp_extract_frames.cpp
cpp/exec/upsp_matrix_transpose.cpp
cpp/exec/xyz_scalar_to_tbl.cpp
cpp/exec/xyz_scalar_to_tbl_delta.cpp
cpp/include/CameraCal.h
cpp/include/CineReader.h
cpp/include/Model.h
cpp/include/MrawReader.h
cpp/include/Octree.h
cpp/include/P3DModel.h
cpp/include/PSPHDF5.h
cpp/include/PSPVideo.h
cpp/include/TriModel.h
cpp/include/cart3d.h
cpp/include/data_structs.h
cpp/include/filtering.h
cpp/include/grids.h
cpp/include/image_processing.h
cpp/include/integration.h
cpp/include/interpolation.h
cpp/include/json.hpp
cpp/include/kulites.h
cpp/include/logging.h
cpp/include/models.h
cpp/include/non_cv_upsp.h
cpp/include/patches.h
cpp/include/plot3d.h
cpp/include/projection.h
cpp/include/registration.h
cpp/include/triangles.h
cpp/include/upsp.h
cpp/include/upsp_inputs.h
cpp/include/vr_cine.h
cpp/include/utils/asyncIO.h
cpp/include/utils/clustering.h
cpp/include/utils/cv_extras.h
cpp/include/utils/file_io.h
cpp/include/utils/file_readers.h
cpp/include/utils/file_writers.h
cpp/include/utils/general_utils.h
cpp/include/utils/general_utils.ipp
cpp/include/utils/pspDbg.h
cpp/include/utils/pspError.h
cpp/include/utils/pspFIO.h
cpp/include/utils/pspKdtree.h
cpp/include/utils/pspOstr.h
cpp/include/utils/pspRT.h
cpp/include/utils/pspRTmem.h
cpp/include/utils/pspSwapit.h
cpp/include/utils/pspTimer.h
cpp/lib/CMakeLists.txt
cpp/lib/CameraCal.cpp
cpp/lib/CameraCal.ipp
cpp/lib/CineReader.cpp
cpp/lib/MrawReader.cpp
cpp/lib/Octree.ipp
cpp/lib/P3DModel.cpp
cpp/lib/P3DModel.ipp
cpp/lib/PSPHDF5.cpp
cpp/lib/PSPHDF5.ipp
cpp/lib/PSPVideo.cpp
cpp/lib/TriModel.ipp
cpp/lib/cart3d.cpp
cpp/lib/data_structs.ipp
cpp/lib/filtering.ipp
cpp/lib/grids.ipp
cpp/lib/image_processing.cpp
cpp/lib/image_processing.ipp
cpp/lib/integration.ipp
cpp/lib/interpolation.ipp
cpp/lib/kulites.cpp
cpp/lib/logging.cpp
cpp/lib/models.ipp
cpp/lib/non_cv_upsp.cpp
cpp/lib/patches.cpp
cpp/lib/patches.ipp
cpp/lib/plot3d.cpp
cpp/lib/projection.cpp
cpp/lib/projection.ipp
cpp/lib/registration.cpp
cpp/lib/registration.ipp
cpp/lib/triangles.ipp
cpp/lib/upsp_inputs.cpp
cpp/pybind11/CMakeLists.txt
cpp/pybind11/cine.cpp
cpp/pybind11/raycast.cpp
cpp/raycast/CMakeLists.txt
cpp/raycast/pspKdtree.c
cpp/raycast/pspRT.cpp
cpp/raycast/pspRTmem.cpp
cpp/test/CMakeLists.txt
cpp/test/run_tests.cpp
cpp/test/test_filtering.cpp
cpp/test/test_general_utils.cpp
cpp/test/test_grid_utils.cpp
cpp/test/test_grid_utils.h
cpp/test/test_grids.cpp
cpp/test/test_h5_class.h
cpp/test/test_models.cpp
cpp/test/test_mraw.cpp
cpp/test/test_p3dmodel.cpp
cpp/test/test_plot3d.cpp
cpp/test/test_projection.h
cpp/test/test_psphdf5.cpp
cpp/test/test_triangles.h
cpp/test/test_trimodel.cpp
cpp/test/inputs/sphere_integ_split.i.tri
cpp/test/inputs/sphere_unf_multi.i.tri
cpp/test/inputs/sphere_unf_multi.tri
cpp/test/inputs/sphere_unf_multi_integration_dp.x
cpp/test/inputs/sphere_unf_multi_integration_dp_bigend.x
cpp/test/inputs/sphere_unf_multi_integration_dp_iblank.x
cpp/test/inputs/sphere_unf_multi_integration_sp.x
cpp/test/inputs/sphere_unf_multi_integration_sp_bigend.x
cpp/test/inputs/sphere_unf_multi_integration_sp_iblank.x
cpp/test/inputs/sphere_unf_single.i.tri
cpp/test/inputs/sphere_unf_single.tri
cpp/test/inputs/sphere_unf_single_integration_dp.x
cpp/test/inputs/sphere_unf_single_integration_dp_bigend.x
cpp/test/inputs/sphere_unf_single_integration_sp.x
cpp/test/inputs/sphere_unf_single_integration_sp_bigend.x
cpp/test/inputs/unstruct_nodal_pencil.h5
cpp/test/inputs/unstruct_nodal_pencil_trans.h5
cpp/test/mraw/12bitMRAW.cih
cpp/test/mraw/12bitMRAW.mraw
cpp/test/outputs/.gitignore
cpp/test/sample_data/26-scalars-with-seps.f
cpp/test/sample_data/26-scalars-without-seps.f
cpp/test/sample_data/pencil.h
cpp/test/sample_data/sample_data.cpp
cpp/test/sample_data/sample_data.h
cpp/test/sample_data/sample_data.ipp
cpp/utils/CMakeLists.txt
cpp/utils/asyncIO.c
cpp/utils/clustering.ipp
cpp/utils/cv_extras.cpp
cpp/utils/cv_extras.ipp
cpp/utils/file_io.cpp
cpp/utils/file_readers.cpp
cpp/utils/file_readers.ipp
cpp/utils/file_writers.cpp
cpp/utils/general_utils.cpp
docs/md/upsp-swdd.md
docs/md/upsp-third-party-dependencies.md
docs/md/upsp-user-manual.md
docs/md/static/flowchart-batch-processing.png
docs/md/static/flowchart-external-calibrate-coarse.png
docs/md/static/flowchart-external-calibrate-refined.png
docs/md/static/flowchart-psp-process.png
docs/md/static/memory-model-psp-process.png
docs/md/static/upsp-footer.html
docs/md/static/upsp-styles.css
docs/sphinx/.gitignore
docs/sphinx/Makefile
docs/sphinx/applications.rst
docs/sphinx/citing.rst
docs/sphinx/conf.py
docs/sphinx/dependencies.rst
docs/sphinx/docutils.conf
docs/sphinx/file-formats.rst
docs/sphinx/index.rst
docs/sphinx/installation.rst
docs/sphinx/known-issues.rst
docs/sphinx/make.bat
docs/sphinx/quick-start.rst
docs/sphinx/refs.bib
docs/sphinx/swdd.rst
docs/sphinx/terminology.rst
docs/sphinx/_static/flowchart-batch-processing.png
docs/sphinx/_static/flowchart-external-calibrate-coarse.png
docs/sphinx/_static/flowchart-external-calibrate-refined.png
docs/sphinx/_static/flowchart-psp-process.png
docs/sphinx/_static/memory-model-psp-process.png
docs/sphinx/_static/sls-pressure-time-history-screenshot.png
docs/sphinx/_templates/module.rst_t
docs/sphinx/_templates/package.rst_t
python/upsp/__init__.py
python/upsp/_version.py
python/upsp.egg-info/PKG-INFO
python/upsp.egg-info/SOURCES.txt
python/upsp.egg-info/dependency_links.txt
python/upsp.egg-info/requires.txt
python/upsp.egg-info/top_level.txt
python/upsp/cam_cal_utils/__init__.py
python/upsp/cam_cal_utils/camera_tunnel_calibrate.py
python/upsp/cam_cal_utils/external_calibrate.py
python/upsp/cam_cal_utils/img_utils.py
python/upsp/cam_cal_utils/internal_calibration.py
python/upsp/cam_cal_utils/parsers.py
python/upsp/cam_cal_utils/photogrammetry.py
python/upsp/cam_cal_utils/visibility.py
python/upsp/cam_cal_utils/visualization.py
python/upsp/intensity_mapping/__init__.py
python/upsp/intensity_mapping/node_pixel_mapping.py
python/upsp/intensity_mapping/patching.py
python/upsp/kulite_comparison/__init__.py
python/upsp/kulite_comparison/plotting.py
python/upsp/kulite_comparison/selection.py
python/upsp/kulite_comparison/spatial_queries.py
python/upsp/processing/__init__.py
python/upsp/processing/context.py
python/upsp/processing/grids.py
python/upsp/processing/io.py
python/upsp/processing/kulite_processing.py
python/upsp/processing/kulite_utilities.py
python/upsp/processing/p3d_conversions.py
python/upsp/processing/p3d_utilities.py
python/upsp/processing/plot3d.py
python/upsp/processing/tree.py
python/upsp/processing/templates/add-field.sh.template
python/upsp/processing/templates/gltf-viewer.html.template
python/upsp/processing/templates/launcher.sh.template
python/upsp/processing/templates/run-step-parallel.sh.template
python/upsp/processing/templates/run-step-serial.sh.template
python/upsp/target_operations/__init__.py
python/upsp/target_operations/blob_localization_methods.py
python/upsp/target_operations/gaussian_localization_methods.py
python/upsp/target_operations/target_bumping.py
python/upsp/target_operations/target_detection.py
python/upsp/video/__init__.py
python/upsp/video/__main__.py
python/upsp/video/base.py
python/upsp/video/cine.py
python/upsp/video/mraw.py
python/upsp/video/util.py
scripts/activate.csh
scripts/activate.sh
scripts/upsp-external-calibration
scripts/upsp-kulite-comparison
scripts/upsp-make-processing-tree
scripts/upsp-plotting
scripts/upsp-qsub-args
scripts/version
test/data/data.csv
test/data/fml_tc3_volume.grid
test/data/fml_tc3_volume.tgts
test/data/test_config.json
test/data/wtd_test.wtd
test/data/camera-tunnel-calibration/camera01_35_6.json
test/data/camera-tunnel-calibration/camera05_35_6.json
test/data/detection/Annotations/CAM1_RUN8_CINE02_Y20000209H11294501.00001.xml
test/data/detection/Annotations/CAM5_RUN8_CINE02_Y20220209H11291505.00001.xml
test/data/images/CAM1_RUN8_CINE02_Y20000209H11294501.00001.png
test/data/images/CAM5_RUN8_CINE02_Y20220209H11291505.00001.png
test/data/internal-calibration/calibio_incal_test.json
test/data/internal-calibration/camera01_35_6.json
test/data/internal-calibration/camera05_35_6.json
test/data/output/output.placeholder
test/python/file_structure.py
test/python/test_camera_tunnel_calibration.py
test/python/test_external_calibrate.py
test/python/test_img_utils.py
test/python/test_internal_calibration.py
test/python/test_node_pixel_mapping.py
test/python/test_parsers.py
test/python/test_patching.py
test/python/test_photogrammetry.py
test/python/test_target_bumping.py
test/python/test_target_detection.py
test/python/test_target_localization_methods.py
test/python/test_video.py
test/python/test_visibility.py