.gitignore
LICENSE
README.md
build.bash
pyproject.toml
requirements.txt
setup.py
.github/workflows/tests.yml
.idea/.gitignore
.idea/bcf_extras.iml
.idea/misc.xml
.idea/modules.xml
.idea/vcs.xml
.idea/inspectionProfiles/Project_Default.xml
.idea/inspectionProfiles/profiles_settings.xml
bcf_extras/__init__.py
bcf_extras/add_header_lines.py
bcf_extras/copy_compress_index.py
bcf_extras/entry.py
bcf_extras/exceptions.py
bcf_extras/filter_gff3.py
bcf_extras/parallel_mergestr.py
bcf_extras/reformat_vcf_contigs.py
bcf_extras.egg-info/PKG-INFO
bcf_extras.egg-info/SOURCES.txt
bcf_extras.egg-info/dependency_links.txt
bcf_extras.egg-info/entry_points.txt
bcf_extras.egg-info/requires.txt
bcf_extras.egg-info/top_level.txt
tests/__init__.py
tests/test_ahl.py
tests/test_arg_join.py
tests/test_cci.py
tests/vcfs/ahl.vcf
tests/vcfs/ahl_target_1.vcf
tests/vcfs/ahl_target_2.vcf
tests/vcfs/ahl_target_3.vcf
tests/vcfs/cci.vcf
tests/vcfs/new_lines.txt