README.rst
setup.py
basevar/BaseVar.py
basevar/__init__.py
basevar.egg-info/PKG-INFO
basevar.egg-info/SOURCES.txt
basevar.egg-info/dependency_links.txt
basevar.egg-info/entry_points.txt
basevar.egg-info/requires.txt
basevar.egg-info/top_level.txt
basevar/caller/__init__.py
basevar/caller/algorithm.py
basevar/caller/bam.py
basevar/caller/basetype.py
basevar/caller/basetypebam.py
basevar/caller/basetypebatch.py
basevar/caller/basetypeprocess.py
basevar/caller/batchgenerator.py
basevar/caller/coverageprocess.py
basevar/caller/executor.py
basevar/caller/logger.py
basevar/caller/mpileup.py
basevar/caller/utils.py
basevar/caller/vcfutils.py
basevar/caller/other/__init__.py
basevar/caller/other/nearby_indel.py
basevar/caller/vqsr/__init__.py
basevar/caller/vqsr/variant_data_manager.py
basevar/caller/vqsr/variant_datum.py
basevar/caller/vqsr/variant_recalibrator.py
basevar/caller/vqsr/variant_recalibrator_argument_collection.py
basevar/caller/vqsr/variant_recalibrator_engine.py
basevar/caller/vqsr/vqsr.py