LICENSE
MANIFEST.in
README.md
setup.py
SigProfilerMatrixGenerator/__init__.py
SigProfilerMatrixGenerator/install.py
SigProfilerMatrixGenerator/test_helpers.py
SigProfilerMatrixGenerator/version.py
SigProfilerMatrixGenerator.egg-info/PKG-INFO
SigProfilerMatrixGenerator.egg-info/SOURCES.txt
SigProfilerMatrixGenerator.egg-info/dependency_links.txt
SigProfilerMatrixGenerator.egg-info/entry_points.txt
SigProfilerMatrixGenerator.egg-info/not-zip-safe
SigProfilerMatrixGenerator.egg-info/requires.txt
SigProfilerMatrixGenerator.egg-info/top_level.txt
SigProfilerMatrixGenerator/controllers/__init__.py
SigProfilerMatrixGenerator/controllers/cli_controller.py
SigProfilerMatrixGenerator/references/CNV/.DS_Store
SigProfilerMatrixGenerator/references/CNV/CNV_features.tsv
SigProfilerMatrixGenerator/references/CNV/CN_classes_dictionary.txt
SigProfilerMatrixGenerator/references/CNV/example_input/Battenberg_test.tsv
SigProfilerMatrixGenerator/references/CNV/example_input/all.breast.ascat.summary.sample.tsv
SigProfilerMatrixGenerator/references/CNV/example_output/BATTENBERG-TEST.CNV48.matrix.tsv
SigProfilerMatrixGenerator/references/SV/.DS_Store
SigProfilerMatrixGenerator/references/SV/example_input/.DS_Store
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11346a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11348a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11352a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11361a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11379a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11384a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11389a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11742a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11743a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11748a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13162a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13167a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13297a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13298a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13306a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD14456a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD14472a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD17973a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD18031a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD22364a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD23566a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24217a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24225a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24303a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24314a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4069a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4103a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4199a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4255a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4606a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4875a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4957a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD6048a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD6414a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7199a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7205a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7238a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7305a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8832a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8969a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8982a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9002a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9064a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9541a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9568a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9572a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9589a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9593a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9755a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9756a.560_breast.rearrangements.n560.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA130927.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA270468.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA321048.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA410978.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413642.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413758.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413928.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA499742.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA499746.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501385.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501469.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501576.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501599.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501607.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505478.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505529.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505768.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505918.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA507250.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA515261.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA515347.bedpe.tsv
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SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA517376.bedpe.tsv
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SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528809.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528848.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528876.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528947.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529739.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529747.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529774.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529837.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530440.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530512.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530594.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530642.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA533704.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA538871.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA538992.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA539008.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA541765.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA541894.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542155.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542181.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542577.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542830.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542879.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA569081.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA570843.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA570896.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/VCF/COLO829v003T.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/VCF/COLO829v003T.purple.sv.vcf
SigProfilerMatrixGenerator/references/SV/example_input/VCF/delly.bedpe
SigProfilerMatrixGenerator/references/SV/example_input/VCF/delly.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/VCF/delly.vcf
SigProfilerMatrixGenerator/references/SV/example_input/VCF/gnomad.bedpe
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SigProfilerMatrixGenerator/references/SV/example_input/VCF/gnomad.vcf
SigProfilerMatrixGenerator/references/SV/example_input/VCF/lumpy.bedpe
SigProfilerMatrixGenerator/references/SV/example_input/VCF/lumpy.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/VCF/lumpy.vcf
SigProfilerMatrixGenerator/references/SV/example_input/VCF/manta.bedpe
SigProfilerMatrixGenerator/references/SV/example_input/VCF/manta.bedpe.tsv
SigProfilerMatrixGenerator/references/SV/example_input/VCF/manta.vcf
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_1536.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_192.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_24.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_384.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6144.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_96.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS186.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female.csv
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SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female.csv
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SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female_exome.csv
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SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_exome_old.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female.csv
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SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female.csv
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SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male.csv
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SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female.csv
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SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female_exome.csv
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SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female.csv
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SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_signatures_96.txt
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_1536_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_192_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_24_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_384_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6144_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_96_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS186_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS_female.csv
SigProfilerMatrixGenerator/references/chromosomes/exome/__init__.py
SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37/GRCh37_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38/GRCh38_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans/c_elegans_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/exome/dog/dog_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/ebv_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/multipleVariableTesting_mar12_2020.txt
SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/tcga_cyclic_regions(AutoRecovered).csv
SigProfilerMatrixGenerator/references/chromosomes/exome/mm10/mm10_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/exome/mm39/mm39_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/exome/mm9/mm9_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/exome/rn6/rn6_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/exome/yeast/yeast_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/transcripts/__init__.py
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/10_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/11_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/12_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/13_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/14_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/15_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/16_transcripts.txt
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SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/18_transcripts.txt
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SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/2_transcripts.txt
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SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/X_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/Y_transcripts.txt
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SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/Y_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/III_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/II_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/IV_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/I_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/MtDNA_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/V_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/X_transcripts.txt
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SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/3_transcripts.txt
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SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/9_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/X_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv/gi_82503188_ref_NC_007605_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/10_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/11_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/12_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/13_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/14_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/15_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/16_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/17_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/18_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/19_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/1_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/2_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/3_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/4_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/5_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/6_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/7_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/8_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/9_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/MT_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/X_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/Y_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/10_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/11_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/12_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/13_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/14_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/15_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/16_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/17_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/18_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/19_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/1_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/2_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/3_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/4_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/5_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/6_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/7_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/8_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/9_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/X_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/Y_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/10_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/11_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/12_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/13_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/14_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/15_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/16_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/17_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/18_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/19_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/1_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/2_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/3_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/4_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/5_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/6_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/7_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/8_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/9_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/MT_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/X_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/Y_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/10_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/11_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/12_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/13_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/14_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/15_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/16_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/17_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/18_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/19_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/1_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/20_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/2_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/3_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/4_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/5_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/6_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/7_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/8_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/9_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/MT_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/X_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/Y_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/10_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/11_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/12_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/13_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/14_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/15_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/16_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/17_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/18_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/19_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/1_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/20_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/2_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/3_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/4_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/5_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/6_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/7_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/8_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/9_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/MT_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/X_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/Y_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/III_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/II_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/IV_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/IX_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/I_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/M_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VIII_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VII_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VI_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/V_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XIII_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XII_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XIV_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XI_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XVI_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XV_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/X_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/__init__.py
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/10_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/11_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/12_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/13_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/14_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/15_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/16_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/17_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/18_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/19_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/1_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/20_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/21_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/22_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/2_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/3_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/4_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/5_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/6_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/7_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/8_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/9_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/Y_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/10_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/11_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/12_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/13_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/14_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/15_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/16_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/17_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/18_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/19_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/1_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/20_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/21_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/22_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/2_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/3_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/4_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/5_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/6_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/7_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/8_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/9_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/Y_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/III_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/II_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/IV_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/I_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/MtDNA_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/V_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/10_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/11_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/12_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/13_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/14_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/15_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/16_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/17_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/18_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/19_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/1_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/20_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/21_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/22_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/23_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/24_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/25_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/26_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/27_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/28_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/29_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/2_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/30_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/31_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/32_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/33_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/34_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/35_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/36_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/37_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/38_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/3_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/4_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/5_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/6_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/7_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/8_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/9_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/10_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/11_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/12_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/13_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/14_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/15_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/16_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/17_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/18_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/19_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/1_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/2_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/3_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/4_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/5_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/6_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/7_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/8_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/9_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/Y_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/10_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/11_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/12_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/13_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/14_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/15_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/16_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/17_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/18_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/19_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/1_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/2_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/3_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/4_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/5_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/6_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/7_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/8_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/9_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/Y_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/10_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/11_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/12_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/13_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/14_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/15_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/16_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/17_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/18_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/19_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/1_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/2_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/3_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/4_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/5_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/6_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/7_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/8_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/9_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/Y_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/10_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/11_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/12_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/13_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/14_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/15_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/16_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/17_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/18_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/19_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/1_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/20_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/2_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/3_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/4_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/5_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/6_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/7_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/8_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/9_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/MT_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/Y_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/10_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/11_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/12_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/13_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/14_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/15_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/16_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/17_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/18_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/19_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/1_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/20_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/2_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/3_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/4_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/5_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/6_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/7_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/8_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/9_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/MT_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/Y_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/III_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/II_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/IV_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/IX_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/I_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VIII_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VII_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VI_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/V_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XIII_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XII_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XIV_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XI_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XVI_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XV_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/X_BED_TSB.txt
SigProfilerMatrixGenerator/scripts/CNVMatrixGenerator.py
SigProfilerMatrixGenerator/scripts/MutationMatrixGenerator.py
SigProfilerMatrixGenerator/scripts/SVMatrixGenerator.py
SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGeneratorFunc.py
SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGenerator_CLI.py
SigProfilerMatrixGenerator/scripts/__init__.py
SigProfilerMatrixGenerator/scripts/convert_input_to_simple_files.py
SigProfilerMatrixGenerator/scripts/ref_install.py
SigProfilerMatrixGenerator/scripts/reference_genome_manager.py
SigProfilerMatrixGenerator/scripts/save_chrom_strings.py
SigProfilerMatrixGenerator/scripts/save_chrom_tsb_separate.py
SigProfilerMatrixGenerator/scripts/save_context_distribution.py
SigProfilerMatrixGenerator/scripts/save_tsb_192.py
SigProfilerMatrixGenerator/scripts/vcfToBedpe.py
SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_3072.txt
SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_96.txt
SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_3072.txt
SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_96.txt
SigProfilerMatrixGenerator/scripts/Benchmark/__init__.py
SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_3072.txt
SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_96.txt
SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_3072.txt
SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_96.txt