Metadata-Version: 1.1
Name: BATS
Version: 1.0.0b8
Summary: https://github.com/ContaTP/BATS-Bayesian-Adaptive-Trial-Simulator
Home-page: https://github.com/ContaTP/BATS-Bayesian-Adaptive-Trial-Simulator
Author: Zhenning Yu
Author-email: yuzhenning.bio@gmail.com
License: GPLv3
Description: BATS - Bayesian Adaptive Trial Simulator
        =========================
        
        .. image:: https://raw.githubusercontent.com/ContaTP/BATS-Bayesian-Adaptive-Trial-Simulator/master/BATS/resources/Icon.ico  
           :align: left
           :alt:
           
        Introduction
        -----------
        
        .. image:: https://badge.fury.io/py/BATS.svg
            :target: https://badge.fury.io/py/BATS
            
        .. image:: https://img.shields.io/pypi/l/bats.svg
            :target: http://www.gnu.org/licenses/gpl-3.0
            
        .. image:: https://img.shields.io/pypi/status/bats.svg
            :target: https://badge.fury.io/py/BATS
            
        .. image:: https://img.shields.io/pypi/pyversions/bats.svg
            :target: https://badge.fury.io/py/BATS
        
        Bayesian Adaptive Trial Simulator (BATS) is a Qt-based software used to perform simulation for Bayeisan Multi-arm Multi-stage design.
        
        Installation
        ------------
        
        +---------------------+-------------------------------------------------------------------------------------------------------+
        | Downloads           |  URL                                                                                                  |
        +=====================+=======================================================================================================+
        | Windows Installer   | `BATS-1.0.0-win32.msi <https://sourceforge.net/projects/bats/files/BATS-1.0.0-win32.msi/download>`_   | 
        +---------------------+-------------------------------------------------------------------------------------------------------+
        | Source Code         | `BATS-1.0.0.tar.gz <https://sourceforge.net/projects/bats/files/BATS-1.0.0b7.tar.gz/download>`_       | 
        +---------------------+-------------------------------------------------------------------------------------------------------+
        ``* The Windows users are encouraged to use the Windows Installer because the installation is easy.``
        
        Users can install BATS through an installer with no dependencies (The msi installer only works in Windows now), or through PyPI, which requires Python 3.4 +, several packages and GNU Scientific Library (GSL):
        
        .. code-block:: bash
        
            $ pip install BATS
        
        **Dependencies**:
        
        * Numpy
        * Pandas
        * Matplotlib
        * Cython
        * `cythonGSL <https://github.com/twiecki/CythonGSL>`_
        * `PyQt5 <https://www.riverbankcomputing.com/software/pyqt/download5>`_
        
        **Other dependencies**:
        
        The module requires GNU Scientific Library (`GSL <https://www.gnu.org/software/gsl/>`_) to be installed on user's operating system, because it use the GSL module to draw random variables and calculate choose functions.
        
        * `GSL <https://code.google.com/archive/p/oscats/downloads>`_ For Windows Port.
        
        **Install cythonGSL**
        
        To install cythonGSL, download the source from `Thomas Wiecki's repository <https://github.com/twiecki/CythonGSL>`_, follows the instructions for installation under the page. 
        
        **Install Python Dependencies on Windows (Python 3.4 required)**
        
        .. code-block:: bash
        
            $ pip install numpy pandas matplotlib cython PyQt5 
        
        **Install GSL on Windows (Python 3.4 required)**
        
        Download GSL from the link above, following the `instructions <http://joonro.github.io/blog/posts/installing-gsl-and-cythongsl-in-windows.html>`_, Cython will also require a `C/C++ compiler <https://github.com/cython/cython/wiki/CythonExtensionsOnWindows>`_ to complie the code into Python module.
        
        **Install the Python Dependencies and GSL on Linux**:
        
        .. code-block:: bash
        
            $ pip3 install numpy pandas matplotlib cython PyQt5
            
            $ apt-get install libgsl2
        
        
        Usage
        -----
        
        .. code-block:: python
        
           import BATS
           BATS.__init__()
        
        
        See `documentation <https://github.com/ContaTP/BATS-Bayesian-Adaptive-Trial-Simulator/blob/master/BATS/documentation/Documentation.pdf>`_ for detailed settings
        
        
        License
        -------
        The software is distributed under GPLv3. See License for details
        
        Contact: yuzhenning.bio@gmail.com
        
Keywords: Bayesian,clinical trial,adaptive trial
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Healthcare Industry
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Cython
Classifier: Natural Language :: English
Classifier: Operating System :: MacOS
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX :: Linux
