DELIVERY_FOLDER="$(date '+%Y%m%d')_entrega01"
mkdir -p $DELIVERY_FOLDER/taxprofiler

# Taxprofiling service
cd $DELIVERY_FOLDER/taxprofiler

# Links to reports
ln -s ../../../ANALYSIS/*_TAXPROFILER/multiqc/multiqc_report.html .
mkdir -p krona
for file in ../../../ANALYSIS/*_TAXPROFILER/krona/*.html; do
    base=$(basename "$file")
    ln -s "../$file" "krona/database_${base}"
done
