#1. Fasta file for annotation
#2. Name given to this annotation
#3. Alignment %Identity necessary to include the sequence
#4. Alignment %Length neccesary to include the sequence
#5. Query divisor for the sequence name. (ie. For name Inc_NC_632542_protein-description)
#6. Query field to represent (l:left|r:rigth) (ie. with divisor "_", left would be "Inc" and rigth "protein-description")
#7. Unique. Each sequence will be allowed only once per plasmid. Use y to enable it and n to disable.
#8. Doble Unique. This field uses a provided separator to extract only the best match.
#	(ie within OXA-11 and OXA-48, using "-" as separator will retrieve only one). Use n if not used.
#9. Database type. Protein (prot) or nucleotide (nucl)
#10. Color. Color used to represent this database (blue, green, grey, orange, purple, red, yellow. vvl,, vl, l, d, vd and vvd stands for very v), light(l) and dark(d))


#DDBBFILE,NANE,P_IDENTITY,P_ALIGNMENT,Q_DIVISOR,Q_SIDE_LR,IS_UNIQUE,DOBLE_UNIQUE,DATABASE_TYPE,COLOR

#INSERTION_SEQUENCES
#/data/ucct/bi/research/20160530_ANTIBIOTICS_PSMP_T/ANALYSIS/PLASMIDID/databases/tn_ncbi.fasta_85,tn,95,50,_,l,n,n,nucl,vlgreen
#/data/ucct/bi/research/20160530_ANTIBIOTICS_PSMP_T/REFERENCES/PLASMIDS/IS_ncbi.fasta_100_90,IS,90,80,_,l,n,n,nucl,vlblue
#/data/ucct/bi/research/20160530_ANTIBIOTICS_PSMP_T/ANALYSIS/PLASMIDID/databases/aditional_IS.fasta,AD_IS,80,10,_,l,n,n,prot,blue
/data/ucct/bi/references/plasmidID/plasmid_annotation/IS_PLASMID_ncbi_prot_90.fasta,IS_PL,90,90,_,l,n,n,prot,vlgreen
#VIRULENCE_FACTORS
/data/ucct/bi/references/plasmidID/plasmid_annotation/virulence_ecoli_eaec_stx_ENT.fasta,VIR_E,80,90,:,l,y,n,nucl,vlorange
#/data/ucct/bi/research/20160530_ANTIBIOTIC/Fatal_outbreak.fasta,VIR_F,50,50,_,l,y,n,prot,purple
/data/ucct/bi/references/plasmidID/plasmid_annotation/ALL_Virulence.fasta,VIR,85,50,:,l,y,n,nucl,lpurple
/data/ucct/bi/references/plasmidID/plasmid_annotation/virulence_plasmid.fasta_90,VIR_PL,50,90, ,l,y,n,prot,orange
#/data/ucct/bi/research/20160530_ANTIBIOTICS_PSMP_T/REFERENCES/PLASMIDS/Yersinia_pestis/Yersinia_pestis_vir.fasta_100,VIR_YP,50,85, ,l,y,n,prot,red
#PLASMID_TYPING
/data/ucct/bi/references/plasmidID/plasmid_annotation/plasmidFinder_17_07_2018.fsa,inc,90,90,_,l,y,n,nucl,vlyellow
#/data/ucct/bi/research/20160530_ANTIBIOTICS_PSMP_T/ANALYSIS/PLASMIDID/databases/MOB_AlexOrlek.fasta,MOB,30,50,_,l,n,n,prot,dgrey
/data/ucct/bi/references/plasmidID/plasmid_annotation/MOB_ncbi_90.fasta,MOB_ncbi,95,80,_,l,y,n,prot,lgrey
/data/ucct/bi/references/plasmidID/plasmid_annotation/INCLM.fasta,INCLM,30,50,_,l,n,n,prot,dgreen
/data/ucct/bi/references/plasmidID/plasmid_annotation/IncA_C.fasta,INCAC,30,50,_,l,n,n,prot,dgreen
#ABR
/data/ucct/bi/references/plasmidID/plasmid_annotation/qacED1.fasta,qacED1,80,50,_,l,y,n,nucl,vlred
#/data/ucct/bi/references/plasmidID/plasmid_annotation/ARGannot.pID.fasta,abr,98,90, ,r,y,-,nucl,vlred
#ARIBA CARD
/data/ucct/bi/references/ariba/20191219/card/out.card.fa,card,98,90,.,l,y,-,nucl,vvlred
