DELIVERY_FOLDER="$(date '+%Y%m%d')_entrega01"

mkdir -p $DELIVERY_FOLDER
mkdir $DELIVERY_FOLDER/mlst

# Assembly service
cd $DELIVERY_FOLDER/mlst

# Links to reports
ln -s ../../../ANALYSIS/*CHEWBBACA/*-chewbbaca/allele_calling_evaluation/allelecall_report.html .
ln -s ../../../ANALYSIS/*CHEWBBACA/*-chewbbaca/allele_calling_evaluation/distance_matrix_symmetric.tsv .
ln -s ../../../ANALYSIS/*CHEWBBACA/*-chewbbaca/allele_calling/results_alleles.tsv .
ln -s ../../../ANALYSIS/*CHEWBBACA/*-chewbbaca/allele_calling_evaluation/cgMLST_MSA.fasta .
ln -s ../../../ANALYSIS/*CHEWBBACA/*-grapetree/*.nwk
ln -s ../../../ANALYSIS/*CHEWBBACA/*-grapetree/*.svg
