LICENSE
README.rst
pypi-readme.rst
pyproject.toml
dnacauldron/Filter.py
dnacauldron/SequenceRepository.py
dnacauldron/__init__.py
dnacauldron/cli.py
dnacauldron/reports.py
dnacauldron/tools.py
dnacauldron/version.py
dnacauldron.egg-info/PKG-INFO
dnacauldron.egg-info/SOURCES.txt
dnacauldron.egg-info/dependency_links.txt
dnacauldron.egg-info/entry_points.txt
dnacauldron.egg-info/requires.txt
dnacauldron.egg-info/top_level.txt
dnacauldron/Assembly/Assembly.py
dnacauldron/Assembly/AssemblyFlaw.py
dnacauldron/Assembly/AssemblySimulation.py
dnacauldron/Assembly/__init__.py
dnacauldron/Assembly/AssemblyReportWriter/AssemblyPlotTranslator.py
dnacauldron/Assembly/AssemblyReportWriter/AssemblyReportPlotsMixin.py
dnacauldron/Assembly/AssemblyReportWriter/AssemblyReportWriter.py
dnacauldron/Assembly/AssemblyReportWriter/__init__.py
dnacauldron/Assembly/AssemblyReportWriter/plot_cuts.py
dnacauldron/Assembly/builtin_assembly_classes/BASICAssembly.py
dnacauldron/Assembly/builtin_assembly_classes/BioBrickStandardAssembly.py
dnacauldron/Assembly/builtin_assembly_classes/GibsonAssembly.py
dnacauldron/Assembly/builtin_assembly_classes/LigaseCyclingReactionAssembly.py
dnacauldron/Assembly/builtin_assembly_classes/OligoPairAnnealing.py
dnacauldron/Assembly/builtin_assembly_classes/Type2sRestrictionAssembly.py
dnacauldron/Assembly/builtin_assembly_classes/__init__.py
dnacauldron/AssemblyMix/AssemblyMix.py
dnacauldron/AssemblyMix/AssemblyMixError.py
dnacauldron/AssemblyMix/HomologousAssemblyMix.py
dnacauldron/AssemblyMix/LigaseCyclingReactionMix.py
dnacauldron/AssemblyMix/RestrictionLigationMix.py
dnacauldron/AssemblyMix/__init__.py
dnacauldron/AssemblyMix/StickyEndAssemblyMix/PlotsMixin.py
dnacauldron/AssemblyMix/StickyEndAssemblyMix/SlotsMixin.py
dnacauldron/AssemblyMix/StickyEndAssemblyMix/StickyEndAssemblyMix.py
dnacauldron/AssemblyMix/StickyEndAssemblyMix/__init__.py
dnacauldron/AssemblyMix/mixins/ConnectorsMixin.py
dnacauldron/AssemblyMix/mixins/ConstructsMixin.py
dnacauldron/AssemblyMix/mixins/FragmentsMixin.py
dnacauldron/AssemblyMix/mixins/GraphsMixin.py
dnacauldron/AssemblyMix/mixins/PlotsMixin.py
dnacauldron/AssemblyMix/mixins/__init__.py
dnacauldron/AssemblyPlan/AssemblyPlan.py
dnacauldron/AssemblyPlan/AssemblyPlanSimulation.py
dnacauldron/AssemblyPlan/__init__.py
dnacauldron/AssemblyPlan/plot_leveled_graph.py
dnacauldron/Fragment/Fragment.py
dnacauldron/Fragment/FragmentChain.py
dnacauldron/Fragment/__init__.py
dnacauldron/Fragment/HomologousFragment/HomologousFragment.py
dnacauldron/Fragment/HomologousFragment/HomologyChecker.py
dnacauldron/Fragment/HomologousFragment/__init__.py
dnacauldron/Fragment/StickyEndFragment/StickyEnd.py
dnacauldron/Fragment/StickyEndFragment/StickyEndFragment.py
dnacauldron/Fragment/StickyEndFragment/StickyEndSeq.py
dnacauldron/Fragment/StickyEndFragment/__init__.py
dnacauldron/biotools/__init__.py
dnacauldron/biotools/autoselect_enzyme.py
dnacauldron/biotools/record_operations.py
dnacauldron/biotools/sequence_io.py
dnacauldron/report_assets/report_style.css
dnacauldron/report_assets/simulation_report.pug
dnacauldron/report_assets/imgs/logo.png
dnacauldron/utils/__init__.py
dnacauldron/utils/insert_parts_on_backbones.py
dnacauldron/utils/utils.py
tests/test_AssemblyPlan.py
tests/test_filters.py
tests/test_reports.py
tests/test_sequence_repository.py
tests/test_type2S_assembly.py