Metadata-Version: 1.0
Name: bio2bel-expasy
Version: 0.1.1
Summary: A package for parsing and storing the ExPASy Enzyme Database
Home-page: https://github.com/bio2bel/expasy
Author: Charles Tapley Hoyt
Author-email: charles.hoyt@scai.fraunhofer.de
License: MIT License
Description-Content-Type: UNKNOWN
Description: Bio2BEL ExPASy |build| |coverage| |docs|
        ========================================
        This repository downloads and parses the enzyme classes from the ExPASy ENZYME database
        
        Installation |pypi_version| |python_versions| |pypi_license|
        ------------------------------------------------------------
        Download the latest stable code from `PyPI <https://pypi.org/project/bio2bel_expasy>`_ with:
        
           $ python3 -m pip install bio2bel_expasy
        
        or check the `installation instructions <http://bio2bel.readthedocs.io/projects/expasy/en/latest/#installation>`_.
        
        Command Line Interface
        ----------------------
        To output the hierarchy of enzyme classes, type the following in the command line:
        
        :code:`bio2bel_expasy write -f ~/Desktop/ec.bel`
        
        Programmatic Interface
        ----------------------
        To enrich the proteins in a BEL Graph with their enzyme classes, use:
        
        >>> from bio2bel_expasy import enrich_proteins
        >>> graph = ... # get a BEL graph
        >>> enrich_proteins(graph)
        
        Citations
        ---------
        Gasteiger, E., *et al.* (2003). `ExPASy: The proteomics server for in-depth protein knowledge and analysis
        <http://www.ncbi.nlm.nih.gov/pubmed/12824418>`_. Nucleic Acids Research, 31(13), 3784–8.
        
        
        .. |build| image:: https://travis-ci.org/bio2bel/expasy.svg?branch=master
            :target: https://travis-ci.org/bio2bel/expasy
            :alt: Build Status
        
        .. |coverage| image:: https://codecov.io/gh/bio2bel/expasy/coverage.svg?branch=master
            :target: https://codecov.io/gh/bio2bel/expasy?branch=master
            :alt: Coverage Status
        
        .. |docs| image:: http://readthedocs.org/projects/bio2bel-expasy/badge/?version=latest
            :target: http://bio2bel.readthedocs.io/projects/ExPASy/en/latest/?badge=latest
            :alt: Documentation Status
        
        .. |python_versions| image:: https://img.shields.io/pypi/pyversions/bio2bel_expasy.svg
            :alt: Stable Supported Python Versions
        
        .. |pypi_version| image:: https://img.shields.io/pypi/v/bio2bel_expasy.svg
            :alt: Current version on PyPI
        
        .. |pypi_license| image:: https://img.shields.io/pypi/l/bio2bel_expasy.svg
            :alt: Apache 2.0 License
        
Platform: UNKNOWN
