LICENSE
README.md
pyproject.toml
src/sensityper/__init__.py
src/sensityper/ariba_batch_v0.2.py
src/sensityper/html_generator.py
src/sensityper/sensiscript.py
src/sensityper/sensityper.py
src/sensityper/sensityping_metrics.py
src/sensityper.egg-info/PKG-INFO
src/sensityper.egg-info/SOURCES.txt
src/sensityper.egg-info/dependency_links.txt
src/sensityper.egg-info/entry_points.txt
src/sensityper.egg-info/requires.txt
src/sensityper.egg-info/top_level.txt
src/sensityper/resources/sensitype.db
src/sensityper/resources/sensitype.penA.db
src/sensityper/resources/ariba_db/00.info.txt
src/sensityper/resources/ariba_db/00.version_info.txt
src/sensityper/resources/ariba_db/01.filter.check_genes.log
src/sensityper/resources/ariba_db/01.filter.check_metadata.log
src/sensityper/resources/ariba_db/01.filter.check_metadata.tsv
src/sensityper/resources/ariba_db/01.filter.check_noncoding.log
src/sensityper/resources/ariba_db/02.cdhit.all.fa
src/sensityper/resources/ariba_db/02.cdhit.clusters.pickle
src/sensityper/resources/ariba_db/02.cdhit.clusters.tsv
src/sensityper/resources/ariba_db/02.cdhit.gene.fa
src/sensityper/resources/ariba_db/02.cdhit.gene.varonly.fa
src/sensityper/resources/ariba_db/02.cdhit.noncoding.fa
src/sensityper/resources/ariba_db/02.cdhit.noncoding.varonly.fa
src/sensityper/resources/examples/example_data.tab
src/sensityper/resources/examples/out_metrics.tsv
src/sensityper/resources/examples/ariba_output/ariba_summary.csv
src/sensityper/resources/examples/ariba_output/WHO_A_SRR27944640_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_B_SRR27944628_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_C_SRR27944606_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_D_SRR27944595_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_E_SRR27944586_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_F_SRR27944585_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_G_SRR27944584_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_H_SRR27944583_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_I_SRR27944638_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_J_SRR27944637_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_K_SRR27944636_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_L_SRR27944635_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_M_SRR27944634_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_N_SRR27944633_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_O_SRR27944632_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_P_SRR27944631_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_Q_SRR27944630_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_R_SRR27944629_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_S2_SRR27944626_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_S_SRR27944627_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_T_SRR27944625_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_U_SRR27944624_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_V_SRR27944623_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_W_SRR27944622_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_X_SRR27944621_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_Y_SRR27944620_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_Z_SRR27944619_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_alpha_SRR27944639_ARIBA/report_complete.tsv
src/sensityper/resources/examples/ariba_output/WHO_beta_SRR27944617_ARIBA/report_complete.tsv
src/sensityper/resources/examples/sensityper_output/WHO_strains_sensitreat.html
src/sensityper/resources/examples/sensityper_output/WHO_strains_sensitreat.tsv
src/sensityper/resources/examples/sensityper_output/WHO_strains_sensitype.tsv
src/sensityper/resources/examples/sensityper_output/alert_output.tsv