run rutile-fixed-sonnet-3
transcript /Users/yue/.claude/projects/-private-tmp-claude-501--Users-yue-Code-rietx-0433c291-1037-42b9-8cb7-5377547150b7-scratchpad-1504-root-work-rutile-fixed-sonnet-3/6c1e6a43-1e50-4991-a83c-ecf45e8c640a.jsonl

   #  offset    dur    chars     tool       head
   1     1.5    0.0       22     Skill      skill
   2     3.1    0.2     6907     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   3     5.6    1.9      624     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   4     9.1    0.0    36284     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
   5    12.1    1.5      113     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   6    16.1    1.3       55     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc

6 tool calls (4 Bash, 1 Skill, 1 Read), 0 errored
7 API calls, 0.3 min wall, 0.18 M cache-read, 22 k cache-write, 1 k output, mean context 29 k
models: claude-sonnet-5-5 ×7

0 traced interpreter starts, 6 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 3.9 s (0.0%)
    build                                 3      0.0 s [bond_tolerance, probability]
    render_structure                      3      1.2 s [path, polyhedra, size, view, view=c, polyhedra=None]
