run rutile-fixed-opus-3
transcript /Users/yue/.claude/projects/-private-tmp-claude-501--Users-yue-Code-rietx-0433c291-1037-42b9-8cb7-5377547150b7-scratchpad-1504-root-work-rutile-fixed-opus-3/68719618-d977-4175-9aba-520ad9b40e2a.jsonl

   #  offset    dur    chars     tool       head
   1     2.4    0.0       22     Skill      skill
   2     5.3    0.1     7352     Bash       cd .claude/skills/rietx/references; cat api-figure.md; ls ../../../..; cat ../../../../r
   3    10.2    2.1     2985     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   4    15.4    0.0    36284     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
   5    21.7    1.5      337     Bash       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
   6    22.1    1.2   174484     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
   7    29.3    0.9      726     Bash       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
   8    36.2    1.5      280     Bash       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
   9    36.5    1.2   142668     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
  10    53.0    0.0       21     Bash       rm try1.png try2.png && ls

10 tool calls (6 Bash, 3 Read, 1 Skill), 0 errored
9 API calls, 1.0 min wall, 0.26 M cache-read, 29 k cache-write, 4 k output, mean context 32 k
models: claude-opus-5-5 ×9

0 traced interpreter starts, 13 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 4.9 s (0.0%)
    build                                 7      0.0 s [bond_tolerance, probability, centres, disorder, ligands, max_atoms]
    recolour                              2      0.0 s
    render_structure                      3      1.4 s [path, size, view, view=c, mode, mode=ball]
    select                                1      0.0 s [element]
