run rutile-after-opus-1
transcript /Users/yue/.claude/projects/-Users-yue-rietx-agent-runs-2026-10-01-wp1504-figure-work-rutile-after-opus-1/458259dc-469b-434c-8527-2750c214bd4e.jsonl

   #  offset    dur    chars     tool       head
   1     3.5    8.2     8587     Bash       ls; cat rutile.cif; P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/b
   2    14.9    8.0     9226     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/bin/python; D=$($P -c
   3    25.6    3.5     5986     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/bin/python; $P -c "
   4    33.5    3.6     2477     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/bin/python; $P -c "
   5    45.3    3.8      795 ERR Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/bin/python; cat > dra
   6    52.4    3.2     1126     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/bin/python; $P -c "
   7    63.7    4.3      503     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/bin/python; cat > dra
   8    71.5    0.1   196676     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/rutile-after-opus-1/figure.png
   9    81.5    2.9      488     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/bin/python; $P - <<'E
  10    95.1    5.6      487     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/bin/python; cd /Users
  11   102.7    0.0   203688     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/rutile-after-opus-1/figure.png

11 tool calls (9 Bash, 2 Read), 1 errored
12 API calls, 1.8 min wall, 0.34 M cache-read, 30 k cache-write, 6 k output, mean context 31 k
models: claude-opus-5-5 ×12

0 traced interpreter starts, 84 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 36.1 s (0.0%)
    build                                10      0.1 s [bond_tolerance, centres, disorder, ligands, max_atoms, probability]
    component                            40      0.0 s [via, via=edges]
    keep                                  1      0.0 s
    periodicity                          26      0.1 s
    recolour                              4      0.0 s
    render_structure                      2      2.6 s [path, size, view, view=c, size=1200]
    select                                1      0.0 s [element]
