run nac-fixed-opus-2
transcript /Users/yue/.claude/projects/-private-tmp-claude-501--Users-yue-Code-rietx-0433c291-1037-42b9-8cb7-5377547150b7-scratchpad-1504-root-work-nac-fixed-opus-2/28c200e7-79f4-49d9-9ea2-c34d4b094cf9.jsonl

   #  offset    dur    chars     tool       head
   1     2.0    0.0       22     Skill      skill
   2     5.0    0.1     6904     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   3    12.8    1.3     3336     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   4    19.8    1.6     1930     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   5    26.3    0.8      549     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   6    33.5    1.6      368     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   7    39.5    0.7       78     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   8    45.4    1.4      624     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   9    53.0    1.0      385     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
  10    57.6    0.0   135348     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
  11    63.0    1.3       39     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc

11 tool calls (9 Bash, 1 Skill, 1 Read), 0 errored
12 API calls, 1.2 min wall, 0.37 M cache-read, 29 k cache-write, 5 k output, mean context 34 k
models: claude-opus-5-5 ×12

0 traced interpreter starts, 42 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 8.3 s (0.0%)
    build                                14      0.2 s [max_atoms, centres, ligands, bond_tolerance, disorder, probability]
    keep                                  5      0.0 s [complete, complete=True]
    render_structure                     11      2.4 s [path, size, view, size=400, view=auto, view=c]
    select                               12      0.0 s [element, label, site, species]
