run nac-fixed-opus-1
transcript /Users/yue/.claude/projects/-Users-yue-rietx-agent-runs-2026-10-01-wp1504-figure-work-nac-fixed-opus-1/3b6a9f58-4830-4031-b084-fea17732828f.jsonl

   #  offset    dur    chars     tool       head
   1     2.2    0.0       22     Skill      skill
   2     4.8    0.1     7475     Bash       ls; cat .claude/skills/rietx/references/api-figure.md; head -60 nac.cif
   3     5.1    0.0       31     Bash       sed -n 60,200p /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/nac-fixed-opus-
   4     8.5    0.6     4253     Bash       ../../venvs/fixed/bin/python -c "
   5    13.7    0.8      885     Bash       cat > draw.py <<'EOF'
   6    16.6    0.0    80560     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/nac-fixed-opus-1/figure.png
   7    21.6    0.7      531     Bash       ../../venvs/fixed/bin/python -c "
   8    26.8    0.8      312     Bash       cat > draw.py <<'EOF'
   9    30.1    0.0    61176     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/nac-fixed-opus-1/figure.png
  10    35.7    0.8       79     Bash       ../../venvs/fixed/bin/python - <<'EOF'
  11    38.4    0.0    81980     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/nac-fixed-opus-1/try_-30x_10y.
  12    41.9    0.9      320     Bash       sed -i '' 's/fig = rx.viz.render_structure(g2, view=view, size=size, path="figure.png")/

12 tool calls (8 Bash, 3 Read, 1 Skill), 0 errored
12 API calls, 0.8 min wall, 0.38 M cache-read, 29 k cache-write, 3 k output, mean context 34 k
models: claude-opus-5-5 ×12

0 traced interpreter starts, 21 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 3.8 s (0.0%)
    build                                10      0.1 s [centres, max_atoms, bond_tolerance, disorder, ligands, probability]
    keep                                  4      0.0 s
    render_structure                      5      0.6 s [path, size, view, view=c, size=400, turn]
    select                                2      0.0 s [element]
