run lab6-fixed-sonnet-3
transcript /Users/yue/.claude/projects/-private-tmp-claude-501--Users-yue-Code-rietx-0433c291-1037-42b9-8cb7-5377547150b7-scratchpad-1504-root-work-lab6-fixed-sonnet-3/5e8ac049-b649-44a9-84ec-1affd69d36f0.jsonl

   #  offset    dur    chars     tool       head
   1     2.0    0.0       22     Skill      skill
   2     4.1    0.1     6905     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   3     7.9    0.9     8461     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   4    15.3    1.5      722     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   5    21.8    2.2      732     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   6    22.1    1.9    60344     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
   7    35.7    1.2      331 ERR Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   8    39.6    0.8      392 ERR Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   9    40.0    0.3      190 ERR Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
  10    43.1    0.8     1836 ERR Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
  11    43.5    0.3      190 ERR Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
  12    47.2    1.4      218     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
  13    47.2    1.4   253216     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
  14    62.0    2.4      262     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
  15    62.4    2.0   248868     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat

15 tool calls (9 Bash, 5 Read, 1 Skill), 5 errored
11 API calls, 1.1 min wall, 0.36 M cache-read, 36 k cache-write, 7 k output, mean context 36 k
models: claude-sonnet-5-5 ×11

0 traced interpreter starts, 26 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 9.5 s (0.0%)
    build                                 9      0.1 s [centres, ligands, max_atoms, bond_tolerance, disorder, probability]
    keep                                  7      0.0 s
    render_structure                      4      1.8 s [path, polyhedra, size, view, view=auto, polyhedra=True]
    select                                6      0.0 s [element]
