run lab6-fixed-sonnet-2
transcript /Users/yue/.claude/projects/-private-tmp-claude-501--Users-yue-Code-rietx-0433c291-1037-42b9-8cb7-5377547150b7-scratchpad-1504-root-work-lab6-fixed-sonnet-2/03e6f41c-84ac-4cae-a4be-ea40d20a8e5f.jsonl

   #  offset    dur    chars     tool       head
   1     1.8    0.0       22     Skill      skill
   2     3.6    0.1     6905     Bash       cat .claude/skills/rietx/references/api-figure.md; ls
   3     6.4    0.8     4867     Bash       PY=/private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   4    10.6    0.8     4944     Bash       PY=/private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   5    23.2    1.5      161     Bash       PY=/private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   6    28.1    0.8      656     Bash       PY=/private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   7    37.6    1.6      195     Bash       PY=/private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   8    44.0    1.3      254     Bash       PY=/private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   9    44.2    1.2    83344     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
  10    49.8    1.5      220     Bash       PY=/private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
  11    49.8    1.5   323744     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat

11 tool calls (8 Bash, 2 Read, 1 Skill), 0 errored
10 API calls, 0.9 min wall, 0.31 M cache-read, 33 k cache-write, 5 k output, mean context 34 k
models: claude-sonnet-5-5 ×10

0 traced interpreter starts, 20 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 7.2 s (0.0%)
    build                                 7      0.1 s [centres, ligands, bond_tolerance, disorder, max_atoms, probability]
    keep                                  5      0.0 s
    render_structure                      3      1.0 s [axis_labels, path, polyhedra, size, view, view=a]
    select                                5      0.0 s [element]
