run lab6-fixed-opus-2
transcript /Users/yue/.claude/projects/-private-tmp-claude-501--Users-yue-Code-rietx-0433c291-1037-42b9-8cb7-5377547150b7-scratchpad-1504-root-work-lab6-fixed-opus-2/ac8e5c20-4bba-461c-94b5-6ed8f035b107.jsonl

   #  offset    dur    chars     tool       head
   1     2.1    0.0       22     Skill      skill
   2     4.3    0.1     7330     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   3     8.3    0.8     9660     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   4    17.0    1.0      778     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   5    27.8    0.9      199     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   6    37.7    1.3      446     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   7    40.4    0.0    79732     Read       /tmp/try.png
   8    45.9    0.9      236     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   9    55.5    2.1      935     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
  10    59.2    0.0    82364     Read       /tmp/try_opening.png
  11    65.0    1.2      351     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc

11 tool calls (8 Bash, 2 Read, 1 Skill), 0 errored
12 API calls, 1.2 min wall, 0.41 M cache-read, 34 k cache-write, 6 k output, mean context 37 k
models: claude-opus-5-5 ×12

0 traced interpreter starts, 30 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 6.9 s (0.0%)
    build                                13      0.1 s [centres, ligands, extent, bond_tolerance, disorder, max_atoms]
    keep                                  7      0.0 s
    render_structure                      5      1.1 s [path, size, view, turn, size=400, view=[1, 1, 1]]
    select                                5      0.0 s [element]
