run lab6-before-sonnet-2
transcript /Users/yue/.claude/projects/-private-tmp-claude-501--Users-yue-Code-rietx-0433c291-1037-42b9-8cb7-5377547150b7-scratchpad-1504-root-work-lab6-before-sonnet-2/67cb56a4-7816-4d25-9e76-f6645a8e020f.jsonl

   #  offset    dur    chars     tool       head
   1     4.2    0.8      665     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   2     7.6    0.0      478     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   3    10.2    0.1     2030     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   4    12.8    0.0     6864     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   5    17.2    1.2     2911     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   6    17.4    1.0   501588     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
   7    31.1    0.4       31     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   8    31.1    0.4   113216     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat

8 tool calls (6 Bash, 2 Read), 0 errored
7 API calls, 0.6 min wall, 0.13 M cache-read, 18 k cache-write, 3 k output, mean context 21 k
models: claude-sonnet-5-5 ×7

0 traced interpreter starts, 2 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 1.9 s (0.0%)
    build                                 1      0.0 s [bond_tolerance, probability]
    render_structure                      1      0.4 s [hidden, path, polyhedra, hidden=['La'], polyhedra=True]
