run lab6-before-sonnet-1
transcript /Users/yue/.claude/projects/-Users-yue-rietx-agent-runs-2026-10-01-wp1504-figure-work-lab6-before-sonnet-1/83073432-0960-44f0-9718-c672a797b57f.jsonl

   #  offset    dur    chars     tool       head
   1     2.4    3.2      555     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-before-sonnet-1; ls; c
   2     8.5    0.1      396 ERR Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/before/lib/python3.12/site
   3    11.0    0.5      281     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/before/lib/python3.12/site
   4    13.7    0.2     3468     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/before/lib/python3.12/site
   5    16.1    0.1     6140     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/before/lib/python3.12/site
   6    20.3    3.7    10995     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-before-sonnet-1; P=/Us
   7    32.5    4.3     3177     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-before-sonnet-1; P=/Us
   8    49.6    4.6      372 ERR Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-before-sonnet-1; P=/Us
   9    58.2    4.5     1346     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-before-sonnet-1; P=/Us
  10    68.8    2.9      433 ERR Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-before-sonnet-1; P=/Us
  11    68.9    2.9      140 ERR Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-before-sonnet-1/figure.pn
  12    75.0    0.0      126     Edit       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-before-sonnet-1/draw.py
  13    77.4    4.2       11     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-before-sonnet-1; /User
  14    77.6    4.1   443064     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-before-sonnet-1/figure.pn
  15    87.2    3.4       11     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-before-sonnet-1; sed -
  16    87.6    3.1   156844     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-before-sonnet-1/figure.pn

16 tool calls (12 Bash, 3 Read, 1 Edit), 4 errored
14 API calls, 1.6 min wall, 0.38 M cache-read, 33 k cache-write, 6 k output, mean context 29 k
models: claude-sonnet-5-5 ×14

0 traced interpreter starts, 9 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 26.5 s (0.0%)
    build                                 7      0.4 s [bond_tolerance, probability]
    render_structure                      2      1.2 s [mode, path, polyhedra, size, view, mode=ball]
