run lab6-before-opus-3
transcript /Users/yue/.claude/projects/-private-tmp-claude-501--Users-yue-Code-rietx-0433c291-1037-42b9-8cb7-5377547150b7-scratchpad-1504-root-work-lab6-before-opus-3/3b6b8606-ea08-449f-9a9b-8ad66c957a6c.jsonl

   #  offset    dur    chars     tool       head
   1     3.7    1.8    10472     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   2     7.4    0.0     8014     Bash       cd ../../venvs/before/lib/python3.12/site-packages/rietx/viz/figure3d; sed -n 260,420p r
   3    12.9    0.8     1421     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   4    18.7    0.8     8848     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   5    34.6    1.6       66     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   6    39.8    0.0   544320     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
   7    48.5    1.1     2966     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   8    56.5    1.4       66     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   9    59.9    0.0   403324     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat

9 tool calls (7 Bash, 2 Read), 0 errored
10 API calls, 1.1 min wall, 0.28 M cache-read, 34 k cache-write, 6 k output, mean context 32 k
models: claude-opus-5-5 ×10

0 traced interpreter starts, 7 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 6.2 s (0.0%)
    build                                 5      0.1 s [bond_tolerance, probability]
    render_structure                      2      0.9 s [dpi, mode, path, polyhedra, size, mode=ball]
