run lab6-after-sonnet-1
transcript /Users/yue/.claude/projects/-Users-yue-rietx-agent-runs-2026-10-01-wp1504-figure-work-lab6-after-sonnet-1/b74d03c9-9aca-4e77-baab-703afc8cd411.jsonl

   #  offset    dur    chars     tool       head
   1     2.1    2.7      554     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-after-sonnet-1; ls; ca
   2     2.2    2.7       22     Skill      skill
   3     6.5    0.0     6566     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-after-sonnet-1; cat .c
   4     8.9    2.5     4152     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-after-sonnet-1; /Users
   5    14.9    3.2     4319     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-after-sonnet-1; /Users
   6    22.1    3.0      432     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-after-sonnet-1; /Users
   7    32.0    5.0      665     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-after-sonnet-1; /Users
   8    39.7    0.0   143752     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-after-sonnet-1/figure.png
   9    45.7    3.5      251     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-after-sonnet-1; /Users
  10    50.6    0.0   123792     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/lab6-after-sonnet-1/figure.png

10 tool calls (7 Bash, 2 Read, 1 Skill), 0 errored
10 API calls, 0.9 min wall, 0.31 M cache-read, 31 k cache-write, 4 k output, mean context 34 k
models: claude-sonnet-5-5 ×10

0 traced interpreter starts, 13 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 16.8 s (0.0%)
    build                                 6      0.2 s [bond_tolerance, centres, disorder, ligands, max_atoms, probability]
    keep                                  3      0.0 s
    render_structure                      2      1.6 s [path, polyhedra, size, view, size=600, polyhedra=False]
    select                                2      0.0 s [element]
