run gypsum-fixed-sonnet-3
transcript /Users/yue/.claude/projects/-private-tmp-claude-501--Users-yue-Code-rietx-0433c291-1037-42b9-8cb7-5377547150b7-scratchpad-1504-root-work-gypsum-fixed-sonnet-3/5281fca7-5ade-4460-8f18-a220a1383371.jsonl

   #  offset    dur    chars     tool       head
   1     1.4    0.0       22     Skill      skill
   2     3.0    0.1     6907     Bash       cd .claude/skills/rietx/references; cat api-figure.md; ls /private/tmp/claude-501/-Users
   3     7.0    1.1      943     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   4    14.8    1.2     1262     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   5    19.4    1.0      787     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   6    24.6    1.2     2074     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   7    28.0    0.0    33624     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
   8    33.3    1.6     2209     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   9    38.9    1.0       30     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
  10    39.5    0.5    99424     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
  11    52.3    2.2       88     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
  12    52.9    1.7    99424     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
  13    58.0    1.6       30     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
  14    58.6    1.0   157732     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
  15    63.4    0.1       31     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc

15 tool calls (10 Bash, 4 Read, 1 Skill), 0 errored
13 API calls, 1.1 min wall, 0.43 M cache-read, 35 k cache-write, 7 k output, mean context 35 k
models: claude-sonnet-5-5 ×13

0 traced interpreter starts, 26 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 9.1 s (0.0%)
    build                                14      0.2 s [max_atoms, bond_tolerance, centres, disorder, ligands, probability]
    keep                                  5      0.0 s [complete, complete=True, complete=False]
    render_structure                      7      1.7 s [path, size, up, view, up=[0, 1, 0], view=c]
