run gypsum-fixed-sonnet-2
transcript /Users/yue/.claude/projects/-private-tmp-claude-501--Users-yue-Code-rietx-0433c291-1037-42b9-8cb7-5377547150b7-scratchpad-1504-root-work-gypsum-fixed-sonnet-2/dd8fffcc-de4d-4d10-b27f-1cf0dc1e3326.jsonl

   #  offset    dur    chars     tool       head
   1     2.2    0.0       22     Skill      skill
   2     4.8    0.1     6907     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   3     9.4    1.2      495 ERR Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   4    14.1    0.9     3582     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   5    28.1    1.7     2649     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   6    34.5    1.1       84     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   7    38.5    0.0    33892     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
   8    45.4    1.5      671     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   9    48.6    0.0   150356     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat

9 tool calls (6 Bash, 2 Read, 1 Skill), 1 errored
10 API calls, 0.9 min wall, 0.30 M cache-read, 29 k cache-write, 4 k output, mean context 33 k
models: claude-sonnet-5-5 ×10

0 traced interpreter starts, 15 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 5.4 s (0.0%)
    build                                 7      0.1 s [bond_tolerance, centres, disorder, ligands, max_atoms, probability]
    keep                                  4      0.0 s
    render_structure                      4      1.1 s [path, size, up, view, up=[0, 1, 0], view=c]
