run gypsum-fixed-sonnet-1
transcript /Users/yue/.claude/projects/-Users-yue-rietx-agent-runs-2026-10-01-wp1504-figure-work-gypsum-fixed-sonnet-1/612e6856-774d-409d-83f0-fd87c9351bd2.jsonl

   #  offset    dur    chars     tool       head
   1     1.7    0.0       22     Skill      skill
   2     3.1    0.1     6907     Bash       cat .claude/skills/rietx/references/api-figure.md; ls
   3     6.2    0.8      420     Bash       cat > d.py <<'E'
   4     9.2    0.0    33764     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/gypsum-fixed-sonnet-1/t.png
   5    12.5    0.6     1076     Bash       cat > d.py <<'E'
   6    21.0    0.8      786     Bash       cat > d.py <<'E'
   7    23.3    0.0    36848     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/gypsum-fixed-sonnet-1/t_c.png
   8    26.1    0.0       69 ERR Bash       sed -i 's/for v in \["c","a"\]/for v in ["c"]/; s/size=500,path=f"t_{v}.png"/size=900,pa
   9    28.4    0.8      294     Bash       sed -i '' 's/for v in \["c","a"\]/for v in ["c"]/; s/size=500,path=f"t_{v}.png"/size=900

9 tool calls (6 Bash, 2 Read, 1 Skill), 1 errored
10 API calls, 0.5 min wall, 0.29 M cache-read, 25 k cache-write, 3 k output, mean context 31 k
models: claude-sonnet-5-5 ×10

0 traced interpreter starts, 12 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 2.6 s (0.0%)
    build                                 6      0.0 s [max_atoms, bond_tolerance, probability, centres, disorder, ligands]
    keep                                  2      0.0 s [complete, complete=True]
    render_structure                      4      0.4 s [path, size, view, up, up=[0, 1, 0], view=a]
