run gypsum-fixed-opus-1
transcript /Users/yue/.claude/projects/-Users-yue-rietx-agent-runs-2026-10-01-wp1504-figure-work-gypsum-fixed-opus-1/faaa00e4-77f0-41dc-af89-64ea14fc131f.jsonl

   #  offset    dur    chars     tool       head
   1     2.7    0.0       22     Skill      skill
   2     6.1    0.1     7510     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/gypsum-fixed-opus-1; cat .c
   3    12.3    0.6     1070     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/gypsum-fixed-opus-1; /Users
   4    20.8    1.0      413     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/gypsum-fixed-opus-1; cat > 
   5    26.0    2.6     3994     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/gypsum-fixed-opus-1; P=/Use
   6    35.7    3.2      192     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/gypsum-fixed-opus-1; sed -i
   7    42.7    0.0    64548     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/gypsum-fixed-opus-1/t_auto.png
   8    43.1    0.0    31320     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/gypsum-fixed-opus-1/t_[1,0,2].
   9    53.2    0.8      300     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/gypsum-fixed-opus-1; cat > 
  10    57.3    0.0    35564     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/gypsum-fixed-opus-1/trial.png
  11    64.2    0.8       68     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/gypsum-fixed-opus-1; sed -i
  12    68.3    0.0   148856     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/gypsum-fixed-opus-1/figure.png

12 tool calls (7 Bash, 4 Read, 1 Skill), 0 errored
12 API calls, 1.3 min wall, 0.38 M cache-read, 30 k cache-write, 4 k output, mean context 34 k
models: claude-opus-5-5 ×12

0 traced interpreter starts, 53 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 7.7 s (0.0%)
    build                                23      0.1 s [max_atoms, bond_tolerance, centres, disorder, ligands, probability]
    keep                                 11      0.0 s
    periodicity                           8      0.0 s
    render_structure                     11      1.2 s [path, size, up, view, up=b, size=400]
