run fap-fixed-sonnet-2
transcript /Users/yue/.claude/projects/-private-tmp-claude-501--Users-yue-Code-rietx-0433c291-1037-42b9-8cb7-5377547150b7-scratchpad-1504-root-work-fap-fixed-sonnet-2/4328df3d-5f47-473b-8fcf-3184701b13df.jsonl

   #  offset    dur    chars     tool       head
   1     1.8    0.0       22     Skill      skill
   2     4.0    0.1     6913     Bash       cd .claude/skills/rietx/references; cat api-figure.md; ls /private/tmp/claude-501/-Users
   3     8.6    2.0     3000     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   4    15.9    1.0      557     Bash       cat > t.py <<'E'
   5    15.9    1.0   157712     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
   6    24.8    1.7       78     Bash       cat > fig.py <<'E'
   7    24.8    1.9   292965     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
   8    34.2    1.4       78     Bash       python3 - <<'E'
   9    34.4    1.4   402657     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat

9 tool calls (5 Bash, 3 Read, 1 Skill), 0 errored
7 API calls, 0.7 min wall, 0.19 M cache-read, 34 k cache-write, 4 k output, mean context 32 k
models: claude-sonnet-5-5 ×7

0 traced interpreter starts, 11 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 5.2 s (0.0%)
    build                                 7      0.0 s [bond_tolerance, probability, centres, disorder, ligands, max_atoms]
    render_structure                      4      1.1 s [outline, size, view, view=c, outline=True, size=1800]
