run chains-fixed-sonnet-3
transcript /Users/yue/.claude/projects/-private-tmp-claude-501--Users-yue-Code-rietx-0433c291-1037-42b9-8cb7-5377547150b7-scratchpad-1504-root-work-chains-fixed-sonnet-3/4afe6a2b-5946-45a6-b3fc-663bb753c982.jsonl

   #  offset    dur    chars     tool       head
   1     1.3    0.0       22     Skill      skill
   2     2.9    0.1     6907     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   3     6.5    1.0     1160     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   4    14.7    0.9      335     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   5    22.3    1.5      698     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   6    25.6    0.0    36104     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
   7    26.2    0.0    29500     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
   8    30.1    1.0       18     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   9    30.8    0.3    57400     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat

9 tool calls (5 Bash, 3 Read, 1 Skill), 0 errored
8 API calls, 0.6 min wall, 0.22 M cache-read, 26 k cache-write, 3 k output, mean context 31 k
models: claude-sonnet-5-5 ×8

0 traced interpreter starts, 24 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 3.7 s (0.0%)
    build                                 8      0.0 s [bond_tolerance, centres, disorder, ligands, max_atoms, probability]
    component                             3      0.0 s [via, via=edges]
    keep                                  5      0.0 s
    periodicity                           3      0.0 s
    render_structure                      5      0.6 s [path, size, up, view, up=[0, 0, 1], atom_labels]
