run chains-fixed-opus-2
transcript /Users/yue/.claude/projects/-private-tmp-claude-501--Users-yue-Code-rietx-0433c291-1037-42b9-8cb7-5377547150b7-scratchpad-1504-root-work-chains-fixed-opus-2/8ddf2d0d-b194-49bb-86a9-d552551dc4ac.jsonl

   #  offset    dur    chars     tool       head
   1     2.2    0.0       22     Skill      skill
   2     4.4    0.1     7341     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   3     9.2    1.4     3830     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   4    22.4    2.3      868     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   5    27.5    0.0    25964     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
   6    28.0    0.0    19352     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
   7    36.2    2.1      250     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   8    40.3    0.0    47432     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
   9    47.2    1.4      248     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
  10    50.6    0.0    57196     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat

10 tool calls (5 Bash, 4 Read, 1 Skill), 0 errored
10 API calls, 0.9 min wall, 0.30 M cache-read, 29 k cache-write, 4 k output, mean context 33 k
models: claude-opus-5-5 ×10

0 traced interpreter starts, 17 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 6.1 s (0.0%)
    build                                 8      0.0 s [bond_tolerance, centres, disorder, ligands, max_atoms, probability]
    keep                                  3      0.0 s [complete, complete=True]
    periodicity                           1      0.0 s
    render_structure                      5      1.3 s [path, size, up, view, up=c, size=400]
